PlantSME Plant secondary metabolism enzyme database

Plagiochila semidecurrens (plagiochila_semidecurrens)

Imported from atlas release summary for Plagiochila semidecurrens.

683
Candidate Genes
101
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (93)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 188 12 POD (84) View species results
Terpenoid pathway 169 17 BAHD (62) View species results
Alkaloid pathway 132 18 NMT (21) View species results
Flavonoid pathway 85 10 UFGT (42) View species results
Rosmarinic acid pathway 72 7 C4H (35) View species results
Steroid pathway 37 13 CAS (9) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 633 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 144 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
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Gene Pathway Family Confidence Status
Psem2610014490 Alkaloid T3O medium borderline
Psem3644430060550 Alkaloid T3O medium pass
Psem4081430107630 Alkaloid T3O medium borderline
Psem4253270132470 Alkaloid T3O medium borderline
Psem4318010148240 Alkaloid T3O medium pass
Psem4326870151210 Alkaloid T3O medium borderline
Psem4333710153770 Alkaloid T3O low borderline
Psem4342520157570 Alkaloid T3O medium pass
Psem4343160157830 Alkaloid T3O medium borderline
Psem4354510163940 Alkaloid T3O medium pass
Psem4371280172330 Alkaloid T3O medium borderline
Psem4371910172860 Alkaloid T3O medium borderline
Psem4394300188260 Alkaloid T3O low borderline
Psem4408230200150 Alkaloid T3O medium pass
Psem4409340201460 Alkaloid T3O medium pass
Psem4419220211480 Alkaloid T3O medium pass
Psem4423120215430 Alkaloid T3O medium pass
Psem4425590218000 Alkaloid T3O medium borderline
Psem4427800220610 Alkaloid T3O medium borderline
Psem4432900226210 Alkaloid T3O medium borderline
Psem4435550229610 Alkaloid T3O medium borderline
Psem4441310236760 Alkaloid T3O medium borderline
Psem4447290245040 Alkaloid T3O low borderline
Psem4454950256210 Alkaloid T3O low borderline
Psem4456620258430 Alkaloid T3O medium pass
Psem4459490262330 Alkaloid T3O medium borderline
Psem4460300263620 Alkaloid T3O medium borderline
Psem4460800264210 Alkaloid T3O low borderline
Psem4466130271700 Alkaloid T3O medium pass
Psem4552210278510 Alkaloid T3O medium borderline
Psem4552220278540 Alkaloid T3O medium borderline
Psem4598150280490 Alkaloid T3O medium pass
Psem4598160280500 Alkaloid T3O medium pass
Psem4730296350 Alkaloid T3O medium borderline
Psem7520306210 Alkaloid T3O medium borderline
Psem8770311270 Alkaloid T3O medium borderline