PlantSME Plant secondary metabolism enzyme database

Plagiochila semidecurrens (plagiochila_semidecurrens)

Imported from atlas release summary for Plagiochila semidecurrens.

962
Candidate Protein Records
683
Pathway-Level Records
1791
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Phenylpropanoid pathway 27.53% Terpenoid pathway 24.74% Alkaloid pathway 19.33% Flavonoid pathway 12.45% Rosmarinic acid pathway 10.54% Steroid pathway 5.42%
Family Distribution
C4H 6.37% BAHD 5.86% C3'H/CYP98A 5.19% POD 5.03% CYP76 4.97% 4CL 4.86% NMT 3.41% IFS 3.02%
Other Families 61.31%
More Families (93)
UGT 53 2.96% STR 52 2.9% 7DLGT 48 2.68% UFGT 47 2.62% DWF4/CYP90B1 40 2.23% BR6OX2/CYP85A2 39 2.18% IFR 37 2.07% T3O 36 2.01% F3H 34 1.9% F3'H/CYP75B 31 1.73% TRI/TRII 30 1.68% GS 30 1.68% PAL 27 1.51% H6H 25 1.4% G8O/G8H 23 1.28% HCT 22 1.23% COMT 22 1.23% CAD 21 1.17% SMT1/SMT2/SMT3 21 1.17% LAMT 19 1.06% IO 19 1.06% RAS 17 0.95% ANR 15 0.84% CSE 15 0.84% 8HGO 14 0.78% CNMT 14 0.78% T16H 14 0.78% LAC 14 0.78% SGD 13 0.73% FNS 13 0.73% COR 11 0.61% F3'5'H/CYP75A 11 0.61% PYKS 10 0.56% CYP80B1 10 0.56% CCR 10 0.56% CPD/CYP90A1 10 0.56% PMT 9 0.5% CAS 9 0.5% BR6OX1/CYP85A1 9 0.5% AACT 9 0.5% CYP719 8 0.45% 16OMT 8 0.45% NCS 7 0.39% CODM/T6ODM 7 0.39% CCoAOMT 7 0.39% F5H/CYP84A 7 0.39% TPS 7 0.39% SLS 6 0.34% TAT 6 0.34% CYP71 6 0.34% MVK 6 0.34% BBE 5 0.28% CHS 5 0.28% CPR 5 0.28% DWF5 5 0.28% ISY 4 0.22% CYP80F1 4 0.22% MPO 4 0.22% DFR 4 0.22% HPPR 4 0.22% CYP90D1 4 0.22% PMK 4 0.22% DXS 4 0.22% CMK/IspE 4 0.22% MCT/IspD 4 0.22% TDC 3 0.17% XMT_MXMT_DXMT 3 0.17% ADC 3 0.17% 7DLH 3 0.17% CHI 3 0.17% ANS/LDOX 3 0.17% DWF7 3 0.17% SMO1/SMO2 3 0.17% DET2 3 0.17% SQS/FDFT1 3 0.17% HMGR 3 0.17% HDS/IspG 3 0.17% GGPPS 3 0.17% SQE 2 0.11% ROT3/CYP90C1 2 0.11% FK 2 0.11% DWF1 2 0.11% MVD 2 0.11% MDS/IspF 2 0.11% GES 1 0.06% 6OMT_4OMT_SOMT 1 0.06% CPI1 1 0.06% HYD1 1 0.06% CYP51G1 1 0.06% FPPS 1 0.06% IDI 1 0.06% DXR 1 0.06% HMGS 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 188 12 POD (84) View species results
Terpenoid pathway 169 17 BAHD (62) View species results
Alkaloid pathway 132 18 NMT (21) View species results
Flavonoid pathway 85 10 UFGT (42) View species results
Rosmarinic acid pathway 72 7 C4H (35) View species results
Steroid pathway 37 13 CAS (9) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 633 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 144 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: ISY
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Psem2500012890 Alkaloid ISY low borderline ISY__00003__sp_A0A221J5P3_ISY_ANTMA
Psem4336000154680 Alkaloid ISY medium pass ISY__00002__sp_A0A1C9CX66_CYC2_CAMAC
Psem4381200178790 Alkaloid ISY medium pass ISY__00002__sp_A0A1C9CX66_CYC2_CAMAC
Psem4408300200240 Alkaloid ISY medium pass ISY__00006__sp_A0A221J5X3_ISY1_NEPRA