Plagiochila semidecurrens (plagiochila_semidecurrens)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Phenylpropanoid pathway 27.53% Terpenoid pathway 24.74% Alkaloid pathway 19.33% Flavonoid pathway 12.45% Rosmarinic acid pathway 10.54% Steroid pathway 5.42%

Family Distribution

683 Candidate Genes

C4H 6.37% BAHD 5.86% C3'H/CYP98A 5.19% POD 5.03% CYP76 4.97% 4CL 4.86% NMT 3.41% IFS 3.02%

Other Families 61.31%

More Families (93)

UGT 53 2.96% STR 52 2.9% 7DLGT 48 2.68% UFGT 47 2.62% DWF4/CYP90B1 40 2.23% BR6OX2/CYP85A2 39 2.18% IFR 37 2.07% T3O 36 2.01% F3H 34 1.9% F3'H/CYP75B 31 1.73% TRI/TRII 30 1.68% GS 30 1.68% PAL 27 1.51% H6H 25 1.4% G8O/G8H 23 1.28% HCT 22 1.23% COMT 22 1.23% CAD 21 1.17% SMT1/SMT2/SMT3 21 1.17% LAMT 19 1.06% IO 19 1.06% RAS 17 0.95% ANR 15 0.84% CSE 15 0.84% 8HGO 14 0.78% CNMT 14 0.78% T16H 14 0.78% LAC 14 0.78% SGD 13 0.73% FNS 13 0.73% COR 11 0.61% F3'5'H/CYP75A 11 0.61% PYKS 10 0.56% CYP80B1 10 0.56% CCR 10 0.56% CPD/CYP90A1 10 0.56% PMT 9 0.5% CAS 9 0.5% BR6OX1/CYP85A1 9 0.5% AACT 9 0.5% CYP719 8 0.45% 16OMT 8 0.45% NCS 7 0.39% CODM/T6ODM 7 0.39% CCoAOMT 7 0.39% F5H/CYP84A 7 0.39% TPS 7 0.39% SLS 6 0.34% TAT 6 0.34% CYP71 6 0.34% MVK 6 0.34% BBE 5 0.28% CHS 5 0.28% CPR 5 0.28% DWF5 5 0.28% ISY 4 0.22% CYP80F1 4 0.22% MPO 4 0.22% DFR 4 0.22% HPPR 4 0.22% CYP90D1 4 0.22% PMK 4 0.22% DXS 4 0.22% CMK/IspE 4 0.22% MCT/IspD 4 0.22% TDC 3 0.17% XMT_MXMT_DXMT 3 0.17% ADC 3 0.17% 7DLH 3 0.17% CHI 3 0.17% ANS/LDOX 3 0.17% DWF7 3 0.17% SMO1/SMO2 3 0.17% DET2 3 0.17% SQS/FDFT1 3 0.17% HMGR 3 0.17% HDS/IspG 3 0.17% GGPPS 3 0.17% SQE 2 0.11% ROT3/CYP90C1 2 0.11% FK 2 0.11% DWF1 2 0.11% MVD 2 0.11% MDS/IspF 2 0.11% GES 1 0.06% 6OMT_4OMT_SOMT 1 0.06% CPI1 1 0.06% HYD1 1 0.06% CYP51G1 1 0.06% FPPS 1 0.06% IDI 1 0.06% DXR 1 0.06% HMGS 1 0.06%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Phenylpropanoid pathway	188	12	POD (84)	View species results
Terpenoid pathway	169	17	BAHD (62)	View species results
Alkaloid pathway	132	18	NMT (21)	View species results
Flavonoid pathway	85	10	UFGT (42)	View species results
Rosmarinic acid pathway	72	7	C4H (35)	View species results
Steroid pathway	37	13	CAS (9)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	24	633	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	144	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: NMT

Gene	Pathway	Family	Confidence	Status	Best Target
Psem11190005290	Alkaloid	NMT	low	borderline	NMT__00019__sp_O22781_SUVH2_ARATH
Psem2450012600	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Psem2830017660	Alkaloid	NMT	low	borderline	NMT__00017__sp_F4K1J4_ATXR7_ARATH
Psem2980029370	Alkaloid	NMT	low	borderline	NMT__00016__sp_F4JNX3_CMKMT_ARATH
Psem3050032010	Alkaloid	NMT	low	borderline	NMT__00050__sp_Q944H0_PEAM2_ARATH
Psem3889780078230	Alkaloid	NMT	medium	pass	NMT__00019__sp_O22781_SUVH2_ARATH
Psem4000094970	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Psem4000094980	Alkaloid	NMT	medium	borderline	NMT__00045__sp_Q8VYX1_PEAM1_WHEAT
Psem4106060113900	Alkaloid	NMT	medium	borderline	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Psem4217160126520	Alkaloid	NMT	medium	borderline	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Psem4239380129980	Alkaloid	NMT	low	borderline	NMT__00040__sp_Q84WW6_ASHH1_ARATH
Psem4242390130570	Alkaloid	NMT	medium	pass	NMT__00041__sp_Q8GWT4_ANM15_ARATH
Psem4243760130980	Alkaloid	NMT	medium	pass	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Psem4243760130990	Alkaloid	NMT	medium	pass	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Psem4297290142250	Alkaloid	NMT	medium	borderline	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Psem4302590143750	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
Psem4304530144220	Alkaloid	NMT	low	borderline	NMT__00019__sp_O22781_SUVH2_ARATH
Psem4317290147870	Alkaloid	NMT	medium	pass	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Psem4319690148760	Alkaloid	NMT	medium	pass	NMT__00040__sp_Q84WW6_ASHH1_ARATH
Psem4338770155930	Alkaloid	NMT	medium	pass	NMT__00048__sp_Q8W595_SUVR4_ARATH
Psem4366970169880	Alkaloid	NMT	medium	pass	NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Psem4370171590	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Psem4370350171850	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Psem4384660180950	Alkaloid	NMT	medium	borderline	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Psem4385220181400	Alkaloid	NMT	low	borderline	NMT__00045__sp_Q8VYX1_PEAM1_WHEAT
Psem4390030184590	Alkaloid	NMT	medium	pass	NMT__00025__sp_P93831_CLF_ARATH
Psem4391830185950	Alkaloid	NMT	low	borderline	NMT__00067__sp_Q9T0G7_SUVH9_ARATH
Psem4395960189830	Alkaloid	NMT	medium	borderline	NMT__00023__sp_O82210_ANM12_ARATH
Psem4408310200250	Alkaloid	NMT	medium	borderline	NMT__00011__sp_A9X7L0_ANMT_RUTGR
Psem4412650204680	Alkaloid	NMT	medium	borderline	NMT__00011__sp_A9X7L0_ANMT_RUTGR
Psem4417610209760	Alkaloid	NMT	medium	borderline	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Psem4422010214420	Alkaloid	NMT	medium	borderline	NMT__00011__sp_A9X7L0_ANMT_RUTGR
Psem4422540214900	Alkaloid	NMT	medium	pass	NMT__00016__sp_F4JNX3_CMKMT_ARATH
Psem4424830217460	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
Psem4428500221360	Alkaloid	NMT	low	borderline	NMT__00021__sp_O64827_SUVR5_ARATH
Psem4430440223290	Alkaloid	NMT	medium	borderline	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Psem4430930223930	Alkaloid	NMT	low	borderline	NMT__00020__sp_O23372_ATXR3_ARATH
Psem4431870225060	Alkaloid	NMT	medium	pass	NMT__00034__sp_Q5VN06_CLF_ORYSJ
Psem4431870225070	Alkaloid	NMT	medium	pass	NMT__00069__sp_Q9ZSM8_EZA1_ARATH
Psem4433140226420	Alkaloid	NMT	low	borderline	NMT__00017__sp_F4K1J4_ATXR7_ARATH
Psem4433450226870	Alkaloid	NMT	medium	pass	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Psem4434310228220	Alkaloid	NMT	low	borderline	NMT__00061__sp_Q9SAH5_PLMT_ARATH
Psem4436790231050	Alkaloid	NMT	low	borderline	NMT__00062__sp_Q9SCP7_NAMT1_ARATH
Psem4438500232890	Alkaloid	NMT	medium	pass	NMT__00023__sp_O82210_ANM12_ARATH
Psem4439070233680	Alkaloid	NMT	medium	pass	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Psem4441800237430	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
Psem4452190252270	Alkaloid	NMT	medium	pass	NMT__00016__sp_F4JNX3_CMKMT_ARATH
Psem4455460256840	Alkaloid	NMT	low	borderline	NMT__00024__sp_P0CB22_ATX2_ARATH
Psem4457860259920	Alkaloid	NMT	low	borderline	NMT__00067__sp_Q9T0G7_SUVH9_ARATH
Psem4458290260390	Alkaloid	NMT	medium	borderline	NMT__00011__sp_A9X7L0_ANMT_RUTGR