PlantSME Plant secondary metabolism enzyme database

Plagiochila semidecurrens (plagiochila_semidecurrens)

Imported from atlas release summary for Plagiochila semidecurrens.

962
Candidate Protein Records
683
Pathway-Level Records
1791
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (93)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 188 12 POD (84) View species results
Terpenoid pathway 169 17 BAHD (62) View species results
Alkaloid pathway 132 18 NMT (21) View species results
Flavonoid pathway 85 10 UFGT (42) View species results
Rosmarinic acid pathway 72 7 C4H (35) View species results
Steroid pathway 37 13 CAS (9) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 633 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 144 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Psem4711360292960 Phenylpropanoid POD medium pass
Psem4715230294150 Phenylpropanoid POD medium pass
Psem4715240294170 Phenylpropanoid POD medium pass
Psem5810300310 Phenylpropanoid POD medium pass
Psem6560303130 Phenylpropanoid POD medium pass
Psem7010304340 Phenylpropanoid POD low borderline
Psem8170309160 Phenylpropanoid POD medium pass
Psem9980318020 Phenylpropanoid POD medium pass
Psem9980318030 Phenylpropanoid POD medium pass
Psem10100000460 Rosmarinic Acid 4CL medium pass
Psem10100000480 Rosmarinic Acid 4CL low borderline
Psem11230005450 Rosmarinic Acid 4CL low borderline
Psem3345150045210 Rosmarinic Acid 4CL medium pass
Psem4080770107420 Rosmarinic Acid 4CL low borderline
Psem4227900128350 Rosmarinic Acid 4CL medium pass
Psem4257140133120 Rosmarinic Acid 4CL medium pass
Psem4267830135260 Rosmarinic Acid 4CL low borderline
Psem4360960167310 Rosmarinic Acid 4CL low borderline
Psem4372700173320 Rosmarinic Acid 4CL medium pass
Psem4385300181440 Rosmarinic Acid 4CL medium pass
Psem4401430193990 Rosmarinic Acid 4CL medium pass
Psem4404880197240 Rosmarinic Acid 4CL medium pass
Psem4412150204340 Rosmarinic Acid 4CL low borderline
Psem4419260211550 Rosmarinic Acid 4CL medium pass
Psem4419800212130 Rosmarinic Acid 4CL medium pass
Psem4433200226500 Rosmarinic Acid 4CL medium pass
Psem4434590228510 Rosmarinic Acid 4CL medium pass
Psem4436760231010 Rosmarinic Acid 4CL low borderline
Psem4440470235590 Rosmarinic Acid 4CL low borderline
Psem4441990237640 Rosmarinic Acid 4CL low borderline
Psem4454280255310 Rosmarinic Acid 4CL medium pass
Psem4455430256790 Rosmarinic Acid 4CL low borderline
Psem4456480258110 Rosmarinic Acid 4CL medium pass
Psem4459720262570 Rosmarinic Acid 4CL low borderline
Psem4459770262580 Rosmarinic Acid 4CL low borderline
Psem4661310282330 Rosmarinic Acid 4CL medium pass
Psem4666710282570 Rosmarinic Acid 4CL low borderline
Psem4666720282590 Rosmarinic Acid 4CL low borderline
Psem10220001020 Rosmarinic Acid C4H low borderline
Psem1580009400 Rosmarinic Acid C4H medium pass
Psem2610014490 Rosmarinic Acid C4H medium pass
Psem3120033560 Rosmarinic Acid C4H low borderline
Psem3120033570 Rosmarinic Acid C4H low borderline
Psem3441960047600 Rosmarinic Acid C4H low borderline
Psem3455700050430 Rosmarinic Acid C4H medium pass
Psem3644430060550 Rosmarinic Acid C4H low borderline
Psem3786210063960 Rosmarinic Acid C4H low borderline
Psem3816170069020 Rosmarinic Acid C4H low borderline
Psem3859390073750 Rosmarinic Acid C4H medium pass
Psem3959470089070 Rosmarinic Acid C4H low borderline