Raddia guianensis (raddia_guianensis)
Imported from atlas release summary for Raddia guianensis.
1868
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1868
Candidate Genes
C4H
7.13%
C3'H/CYP98A
5.83%
4CL
5.38%
BAHD
5.06%
UGT
4.57%
POD
4.5%
7DLGT
3.96%
UFGT
3.73%
Other Families
59.85%
More Families (97)
T3O
151
3.52%
CYP76
148
3.45%
IFS
131
3.05%
F3'H/CYP75B
123
2.87%
DWF4/CYP90B1
101
2.35%
BR6OX2/CYP85A2
99
2.31%
CYP71
86
2.0%
F3H
75
1.75%
TRI/TRII
63
1.47%
STR
61
1.42%
NMT
60
1.4%
CAD
57
1.33%
G8O/G8H
55
1.28%
CAS
53
1.24%
SMT1/SMT2/SMT3
51
1.19%
H6H
43
1.0%
GS
43
1.0%
COMT
42
0.98%
CODM/T6ODM
41
0.96%
LAC
41
0.96%
SLS
40
0.93%
PYKS
39
0.91%
FNS
38
0.89%
CSE
38
0.89%
ANR
37
0.86%
16OMT
36
0.84%
SGD
35
0.82%
CCR
35
0.82%
TPS
35
0.82%
PMT
33
0.77%
RAS
33
0.77%
AACT
33
0.77%
T16H
32
0.75%
HCT
32
0.75%
GES
30
0.7%
PAL
30
0.7%
CYP90D1
26
0.61%
IO
23
0.54%
IFR
22
0.51%
F3'5'H/CYP75A
20
0.47%
F5H/CYP84A
19
0.44%
COR
18
0.42%
CYP51G1
18
0.42%
7DLH
17
0.4%
8HGO
16
0.37%
DFR
16
0.37%
CPD/CYP90A1
16
0.37%
NCS
14
0.33%
BR6OX1/CYP85A1
14
0.33%
CHS
13
0.3%
MPO
12
0.28%
FPPS
12
0.28%
LAMT
11
0.26%
BBE
10
0.23%
ROT3/CYP90C1
10
0.23%
SQS/FDFT1
10
0.23%
CPR
9
0.21%
TAT
9
0.21%
GGPPS
9
0.21%
CYP80B1
8
0.19%
HMGR
8
0.19%
ISY
7
0.16%
TDC
7
0.16%
6OMT_4OMT_SOMT
7
0.16%
ANS/LDOX
7
0.16%
HPPR
7
0.16%
DXS
7
0.16%
CNMT
6
0.14%
TYDC_DDC
6
0.14%
SMO1/SMO2
6
0.14%
CYP719
5
0.12%
CCoAOMT
5
0.12%
HDR/IspH
5
0.12%
XMT_MXMT_DXMT
4
0.09%
ADC
4
0.09%
DWF1
4
0.09%
MCT/IspD
4
0.09%
DXR
4
0.09%
CYP80F1
3
0.07%
CHI
3
0.07%
MDS/IspF
3
0.07%
HMGS
3
0.07%
MVD
3
0.07%
FK
2
0.05%
IDI
2
0.05%
CMK/IspE
2
0.05%
MVK
2
0.05%
ODC
1
0.02%
FLS
1
0.02%
CPI1
1
0.02%
DWF7
1
0.02%
DWF5
1
0.02%
SQE
1
0.02%
DET2
1
0.02%
HYD1
1
0.02%
PMK
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 487 | 19 | UGT (181) | View species results |
| Phenylpropanoid pathway | 423 | 11 | POD (182) | View species results |
| Alkaloid pathway | 403 | 23 | 7DLGT (93) | View species results |
| Flavonoid pathway | 273 | 13 | UFGT (153) | View species results |
| Rosmarinic acid pathway | 187 | 7 | C4H (78) | View species results |
| Steroid pathway | 95 | 14 | CAS (40) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1701 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 282 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Rgu000888 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Rgu001177 | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Rgu001178 | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Rgu001317 | Flavonoid | 4CL | medium | pass | 4CL__00008__sp_Q42982_4CL2_ORYSJ |
| Rgu001395 | Flavonoid | 4CL | medium | pass | 4CL__00011__sp_Q6ZAC1_4CL5_ORYSJ |
| Rgu003321 | Flavonoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Rgu003322 | Flavonoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Rgu003803 | Flavonoid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| Rgu004812 | Flavonoid | 4CL | low | borderline | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| Rgu005458 | Flavonoid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Rgu006011 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Rgu006012 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Rgu006157 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Rgu006230 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Rgu006726 | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Rgu006807 | Flavonoid | 4CL | medium | pass | 4CL__00007__sp_Q42524_4CL1_ARATH |
| Rgu008016 | Flavonoid | 4CL | medium | pass | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| Rgu008217 | Flavonoid | 4CL | medium | pass | 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ |
| Rgu009711 | Flavonoid | 4CL | low | borderline | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Rgu010867 | Flavonoid | 4CL | medium | pass | 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ |
| Rgu012227 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Rgu012401 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Rgu013350 | Flavonoid | 4CL | medium | pass | 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ |
| Rgu013901 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Rgu013946 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Rgu014573 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Rgu014583 | Flavonoid | 4CL | medium | pass | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| Rgu014979 | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Rgu015359 | Flavonoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Rgu015640 | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Rgu015660 | Flavonoid | 4CL | medium | pass | 4CL__00008__sp_Q42982_4CL2_ORYSJ |
| Rgu016171 | Flavonoid | 4CL | medium | pass | 4CL__00009__sp_Q67W82_4CL4_ORYSJ |
| Rgu016244 | Flavonoid | 4CL | medium | pass | 4CL__00008__sp_Q42982_4CL2_ORYSJ |
| Rgu017136 | Flavonoid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Rgu017250 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Rgu017550 | Flavonoid | 4CL | low | borderline | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Rgu018737 | Flavonoid | 4CL | medium | pass | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| Rgu019189 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Rgu019690 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Rgu019728 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Rgu019782 | Flavonoid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Rgu019970 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Rgu020316 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Rgu020367 | Flavonoid | 4CL | medium | pass | 4CL__00011__sp_Q6ZAC1_4CL5_ORYSJ |
| Rgu020590 | Flavonoid | 4CL | medium | pass | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| Rgu020644 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Rgu020771 | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Rgu020806 | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Rgu020920 | Flavonoid | 4CL | medium | pass | 4CL__00008__sp_Q42982_4CL2_ORYSJ |
| Rgu020941 | Flavonoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |