PlantSME Plant secondary metabolism enzyme database

Raddia guianensis (raddia_guianensis)

Imported from atlas release summary for Raddia guianensis.

1868
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 26.07% Phenylpropanoid pathway 22.64% Alkaloid pathway 21.57% Flavonoid pathway 14.61% Rosmarinic acid pathway 10.01% Steroid pathway 5.09%
Family Distribution
C4H 7.13% C3'H/CYP98A 5.83% 4CL 5.38% BAHD 5.06% UGT 4.57% POD 4.5% 7DLGT 3.96% UFGT 3.73%
Other Families 59.85%
More Families (97)
T3O 151 3.52% CYP76 148 3.45% IFS 131 3.05% F3'H/CYP75B 123 2.87% DWF4/CYP90B1 101 2.35% BR6OX2/CYP85A2 99 2.31% CYP71 86 2.0% F3H 75 1.75% TRI/TRII 63 1.47% STR 61 1.42% NMT 60 1.4% CAD 57 1.33% G8O/G8H 55 1.28% CAS 53 1.24% SMT1/SMT2/SMT3 51 1.19% H6H 43 1.0% GS 43 1.0% COMT 42 0.98% CODM/T6ODM 41 0.96% LAC 41 0.96% SLS 40 0.93% PYKS 39 0.91% FNS 38 0.89% CSE 38 0.89% ANR 37 0.86% 16OMT 36 0.84% SGD 35 0.82% CCR 35 0.82% TPS 35 0.82% PMT 33 0.77% RAS 33 0.77% AACT 33 0.77% T16H 32 0.75% HCT 32 0.75% GES 30 0.7% PAL 30 0.7% CYP90D1 26 0.61% IO 23 0.54% IFR 22 0.51% F3'5'H/CYP75A 20 0.47% F5H/CYP84A 19 0.44% COR 18 0.42% CYP51G1 18 0.42% 7DLH 17 0.4% 8HGO 16 0.37% DFR 16 0.37% CPD/CYP90A1 16 0.37% NCS 14 0.33% BR6OX1/CYP85A1 14 0.33% CHS 13 0.3% MPO 12 0.28% FPPS 12 0.28% LAMT 11 0.26% BBE 10 0.23% ROT3/CYP90C1 10 0.23% SQS/FDFT1 10 0.23% CPR 9 0.21% TAT 9 0.21% GGPPS 9 0.21% CYP80B1 8 0.19% HMGR 8 0.19% ISY 7 0.16% TDC 7 0.16% 6OMT_4OMT_SOMT 7 0.16% ANS/LDOX 7 0.16% HPPR 7 0.16% DXS 7 0.16% CNMT 6 0.14% TYDC_DDC 6 0.14% SMO1/SMO2 6 0.14% CYP719 5 0.12% CCoAOMT 5 0.12% HDR/IspH 5 0.12% XMT_MXMT_DXMT 4 0.09% ADC 4 0.09% DWF1 4 0.09% MCT/IspD 4 0.09% DXR 4 0.09% CYP80F1 3 0.07% CHI 3 0.07% MDS/IspF 3 0.07% HMGS 3 0.07% MVD 3 0.07% FK 2 0.05% IDI 2 0.05% CMK/IspE 2 0.05% MVK 2 0.05% ODC 1 0.02% FLS 1 0.02% CPI1 1 0.02% DWF7 1 0.02% DWF5 1 0.02% SQE 1 0.02% DET2 1 0.02% HYD1 1 0.02% PMK 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 487 19 UGT (181) View species results
Phenylpropanoid pathway 423 11 POD (182) View species results
Alkaloid pathway 403 23 7DLGT (93) View species results
Flavonoid pathway 273 13 UFGT (153) View species results
Rosmarinic acid pathway 187 7 C4H (78) View species results
Steroid pathway 95 14 CAS (40) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1701 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 282 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
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Gene Pathway Family Confidence Status Best Target
Rgu019792 Alkaloid TRI/TRII low borderline TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
Rgu020225 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
Rgu020650 Alkaloid TRI/TRII low borderline TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH
Rgu020905 Alkaloid TRI/TRII low borderline TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
Rgu021072 Alkaloid TRI/TRII medium pass TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
Rgu021221 Alkaloid TRI/TRII medium pass TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH
Rgu021796 Alkaloid TRI/TRII low borderline TRI_TRII__00005__sp_P50162_TRN1_DATST
Rgu021895 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
Rgu022380 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
Rgu023621 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
Rgu023720 Alkaloid TRI/TRII medium pass TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH
Rgu024070 Alkaloid TRI/TRII medium pass TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH
Rgu024259 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB