PlantSME Plant secondary metabolism enzyme database

Raddia guianensis (raddia_guianensis)

Imported from atlas release summary for Raddia guianensis.

1868
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 26.07% Phenylpropanoid pathway 22.64% Alkaloid pathway 21.57% Flavonoid pathway 14.61% Rosmarinic acid pathway 10.01% Steroid pathway 5.09%
Family Distribution
C4H 7.13% C3'H/CYP98A 5.83% 4CL 5.38% BAHD 5.06% UGT 4.57% POD 4.5% 7DLGT 3.96% UFGT 3.73%
Other Families 59.85%
More Families (97)
T3O 151 3.52% CYP76 148 3.45% IFS 131 3.05% F3'H/CYP75B 123 2.87% DWF4/CYP90B1 101 2.35% BR6OX2/CYP85A2 99 2.31% CYP71 86 2.0% F3H 75 1.75% TRI/TRII 63 1.47% STR 61 1.42% NMT 60 1.4% CAD 57 1.33% G8O/G8H 55 1.28% CAS 53 1.24% SMT1/SMT2/SMT3 51 1.19% H6H 43 1.0% GS 43 1.0% COMT 42 0.98% CODM/T6ODM 41 0.96% LAC 41 0.96% SLS 40 0.93% PYKS 39 0.91% FNS 38 0.89% CSE 38 0.89% ANR 37 0.86% 16OMT 36 0.84% SGD 35 0.82% CCR 35 0.82% TPS 35 0.82% PMT 33 0.77% RAS 33 0.77% AACT 33 0.77% T16H 32 0.75% HCT 32 0.75% GES 30 0.7% PAL 30 0.7% CYP90D1 26 0.61% IO 23 0.54% IFR 22 0.51% F3'5'H/CYP75A 20 0.47% F5H/CYP84A 19 0.44% COR 18 0.42% CYP51G1 18 0.42% 7DLH 17 0.4% 8HGO 16 0.37% DFR 16 0.37% CPD/CYP90A1 16 0.37% NCS 14 0.33% BR6OX1/CYP85A1 14 0.33% CHS 13 0.3% MPO 12 0.28% FPPS 12 0.28% LAMT 11 0.26% BBE 10 0.23% ROT3/CYP90C1 10 0.23% SQS/FDFT1 10 0.23% CPR 9 0.21% TAT 9 0.21% GGPPS 9 0.21% CYP80B1 8 0.19% HMGR 8 0.19% ISY 7 0.16% TDC 7 0.16% 6OMT_4OMT_SOMT 7 0.16% ANS/LDOX 7 0.16% HPPR 7 0.16% DXS 7 0.16% CNMT 6 0.14% TYDC_DDC 6 0.14% SMO1/SMO2 6 0.14% CYP719 5 0.12% CCoAOMT 5 0.12% HDR/IspH 5 0.12% XMT_MXMT_DXMT 4 0.09% ADC 4 0.09% DWF1 4 0.09% MCT/IspD 4 0.09% DXR 4 0.09% CYP80F1 3 0.07% CHI 3 0.07% MDS/IspF 3 0.07% HMGS 3 0.07% MVD 3 0.07% FK 2 0.05% IDI 2 0.05% CMK/IspE 2 0.05% MVK 2 0.05% ODC 1 0.02% FLS 1 0.02% CPI1 1 0.02% DWF7 1 0.02% DWF5 1 0.02% SQE 1 0.02% DET2 1 0.02% HYD1 1 0.02% PMK 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 487 19 UGT (181) View species results
Phenylpropanoid pathway 423 11 POD (182) View species results
Alkaloid pathway 403 23 7DLGT (93) View species results
Flavonoid pathway 273 13 UFGT (153) View species results
Rosmarinic acid pathway 187 7 C4H (78) View species results
Steroid pathway 95 14 CAS (40) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1701 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 282 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
Reset
Gene Pathway Family Confidence Status Best Target
Rgu007108 Terpenoid BAHD medium pass BAHD__00001__sp_A0A068BGA5_AT1_ACTDE
Rgu007109 Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
Rgu007111 Terpenoid BAHD low borderline BAHD__00023__sp_O22975_LPAAT_ARATH
Rgu007276 Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Rgu007293 Terpenoid BAHD medium pass BAHD__00063__sp_Q93VV0_ZDHC6_ARATH
Rgu007363 Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
Rgu007580 Terpenoid BAHD medium pass BAHD__00093__sp_Q9SV07_ASAT1_ARATH
Rgu007699 Terpenoid BAHD medium pass BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH
Rgu007737 Terpenoid BAHD medium pass BAHD__00023__sp_O22975_LPAAT_ARATH
Rgu008130 Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Rgu008241 Terpenoid BAHD medium pass BAHD__00008__sp_A0A2Z5CVQ4_AT1_CROXC
Rgu008439 Terpenoid BAHD low borderline BAHD__00001__sp_A0A068BGA5_AT1_ACTDE
Rgu008445 Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Rgu008564 Terpenoid BAHD low borderline BAHD__00001__sp_A0A068BGA5_AT1_ACTDE
Rgu008965 Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
Rgu009049 Terpenoid BAHD medium pass BAHD__00022__sp_K7PEY4_RAM2_MEDTR
Rgu009229 Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH
Rgu009537 Terpenoid BAHD medium pass BAHD__00034__sp_P10349_GPAT2_CUCMO
Rgu009913 Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
Rgu010174 Terpenoid BAHD low borderline BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
Rgu010420 Terpenoid BAHD medium pass BAHD__00083__sp_Q9LMM0_GPAT4_ARATH
Rgu010516 Terpenoid BAHD medium pass BAHD__00057__sp_Q8L7R3_LPCT1_ARATH
Rgu010550 Terpenoid BAHD low borderline BAHD__00081__sp_Q9LJB4_5MAT_ARATH
Rgu010665 Terpenoid BAHD medium pass BAHD__00006__sp_A0A2R6Q326_AT16_ACTCC
Rgu010960 Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
Rgu010970 Terpenoid BAHD low borderline BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
Rgu011013 Terpenoid BAHD low borderline BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
Rgu011134 Terpenoid BAHD low borderline BAHD__00073__sp_Q9FF86_DCR_ARATH
Rgu011140 Terpenoid BAHD low borderline BAHD__00073__sp_Q9FF86_DCR_ARATH
Rgu011184 Terpenoid BAHD medium pass BAHD__00017__sp_F4IDU4_MBOA1_ARATH
Rgu011305 Terpenoid BAHD medium pass BAHD__00058__sp_Q8LG50_LPAT2_ARATH
Rgu011316 Terpenoid BAHD medium pass BAHD__00008__sp_A0A2Z5CVQ4_AT1_CROXC
Rgu011559 Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
Rgu011560 Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
Rgu011561 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
Rgu011764 Terpenoid BAHD medium pass BAHD__00004__sp_A0A0M4FCN7_RAM2_PETHY
Rgu011773 Terpenoid BAHD medium pass BAHD__00074__sp_Q9FFQ7_FACT_ARATH
Rgu011863 Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
Rgu011888 Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
Rgu011910 Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
Rgu011955 Terpenoid BAHD medium pass BAHD__00097__sp_Q9ZV87_NAPES_ARATH
Rgu012065 Terpenoid BAHD low borderline BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
Rgu012313 Terpenoid BAHD low borderline BAHD__00083__sp_Q9LMM0_GPAT4_ARATH
Rgu012314 Terpenoid BAHD medium pass BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH
Rgu012384 Terpenoid BAHD low borderline BAHD__00002__sp_A0A068BIF1_AT9_ACTER
Rgu012507 Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Rgu012508 Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Rgu012547 Terpenoid BAHD low borderline BAHD__00051__sp_Q7XA86_ZDH11_ARATH
Rgu012675 Terpenoid BAHD medium pass BAHD__00038__sp_Q3EC11_ZDHC2_ARATH
Rgu012937 Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH