PlantSME Plant secondary metabolism enzyme database

Spinacia oleracea (spinacia_oleracea)

Imported from atlas release summary for Spinacia oleracea.

1347
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.8% Phenylpropanoid pathway 23.68% Alkaloid pathway 19.82% Flavonoid pathway 13.96% Rosmarinic acid pathway 8.69% Steroid pathway 5.05%
Family Distribution
C4H 6.0% C3'H/CYP98A 5.88% BAHD 5.73% POD 5.64% UGT 4.47% 4CL 3.94% 7DLGT 3.73% UFGT 3.73%
Other Families 60.89%
More Families (97)
T3O 116 3.46% IFS 115 3.43% CYP76 110 3.28% F3H 109 3.25% DWF4/CYP90B1 82 2.45% NMT 81 2.42% CODM/T6ODM 74 2.21% F3'H/CYP75B 65 1.94% BR6OX2/CYP85A2 53 1.58% CYP71 53 1.58% CAD 50 1.49% TRI/TRII 44 1.31% H6H 44 1.31% STR 43 1.28% SMT1/SMT2/SMT3 39 1.16% HCT 36 1.07% CYP90D1 35 1.04% RAS 34 1.01% COMT 32 0.95% CAS 32 0.95% PYKS 30 0.89% SGD 29 0.87% SLS 29 0.87% GS 28 0.84% G8O/G8H 26 0.78% PMT 25 0.75% CSE 25 0.75% ANR 24 0.72% IFR 24 0.72% LAC 24 0.72% 7DLH 22 0.66% BBE 22 0.66% GES 22 0.66% F3'5'H/CYP75A 22 0.66% TPS 22 0.66% CYP51G1 20 0.6% T16H 18 0.54% CCR 18 0.54% IO 17 0.51% 16OMT 17 0.51% FNS 14 0.42% FPPS 14 0.42% CHS 13 0.39% CNMT 12 0.36% COR 12 0.36% DFR 12 0.36% F5H/CYP84A 12 0.36% NCS 11 0.33% ANS/LDOX 11 0.33% CPR 11 0.33% TAT 11 0.33% AACT 11 0.33% MPO 10 0.3% 8HGO 10 0.3% CCoAOMT 10 0.3% BR6OX1/CYP85A1 10 0.3% SQS/FDFT1 10 0.3% TDC 9 0.27% CPD/CYP90A1 9 0.27% DXR 8 0.24% HPPR 7 0.21% PAL 6 0.18% TYDC_DDC 5 0.15% DET2 5 0.15% ROT3/CYP90C1 5 0.15% GGPPS 5 0.15% DXS 5 0.15% ISY 4 0.12% XMT_MXMT_DXMT 4 0.12% MVK 4 0.12% LAMT 3 0.09% ADC 3 0.09% 6OMT_4OMT_SOMT 3 0.09% CHI 3 0.09% FLS 3 0.09% DWF5 3 0.09% SMO1/SMO2 3 0.09% SQE 3 0.09% MVD 3 0.09% IDI 3 0.09% HMGR 3 0.09% MCT/IspD 3 0.09% CYP80B1 2 0.06% CYP80F1 2 0.06% CYP719 2 0.06% DWF7 2 0.06% DWF1 2 0.06% HYD1 2 0.06% HDS/IspG 2 0.06% MDS/IspF 2 0.06% PMK 2 0.06% FK 1 0.03% CPI1 1 0.03% CMK/IspE 1 0.03% HMGS 1 0.03% GPPS 1 0.03% HDR/IspH 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 388 20 BAHD (143) View species results
Phenylpropanoid pathway 319 11 POD (170) View species results
Alkaloid pathway 267 18 7DLGT (52) View species results
Flavonoid pathway 188 11 UFGT (120) View species results
Rosmarinic acid pathway 117 7 C4H (44) View species results
Steroid pathway 68 13 SMT1/SMT2/SMT3 (25) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1223 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 262 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BAHD
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Gene Pathway Family Confidence Status Best Target
Sole01G0000980 Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Sole01G0000990 Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Sole01G0002710 Terpenoid BAHD low borderline BAHD__00066__sp_Q94CK0_WSD7_ARATH
Sole01G0002850 Terpenoid BAHD low borderline BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
Sole01G0003580 Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH
Sole01G0007270 Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
Sole01G0009430 Terpenoid BAHD medium pass BAHD__00078__sp_Q9LHS7_GPAT7_ARATH
Sole01G0010630 Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH
Sole01G0010640 Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
Sole01G0017800 Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Sole01G0017930 Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Sole01G0021200 Terpenoid BAHD low borderline BAHD__00047__sp_Q5KS41_WSD11_ARATH
Sole01G0022240 Terpenoid BAHD medium pass BAHD__00077__sp_Q9FNA9_PDAT1_ARATH
Sole01G0023050 Terpenoid BAHD low borderline BAHD__00073__sp_Q9FF86_DCR_ARATH
Sole01G0025070 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
Sole01G0026700 Terpenoid BAHD medium pass BAHD__00015__sp_D2Y3X2_PUN1_CAPAN
Sole01G0026710 Terpenoid BAHD medium pass BAHD__00032__sp_P0DO84_AT_STRNX
Sole01G0026720 Terpenoid BAHD medium pass BAHD__00015__sp_D2Y3X2_PUN1_CAPAN
Sole02G0001380 Terpenoid BAHD medium pass BAHD__00046__sp_Q5GKZ7_DAT1A_SOYBN
Sole02G0001390 Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Sole02G0001840 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
Sole02G0007880 Terpenoid BAHD medium pass BAHD__00023__sp_O22975_LPAAT_ARATH
Sole02G0009640 Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
Sole02G0009650 Terpenoid BAHD medium pass BAHD__00006__sp_A0A2R6Q326_AT16_ACTCC
Sole02G0009660 Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
Sole02G0009810 Terpenoid BAHD medium pass BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH
Sole02G0010140 Terpenoid BAHD medium pass BAHD__00080__sp_Q9LIH7_ZDHC7_ARATH
Sole02G0010280 Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
Sole02G0010930 Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
Sole02G0010940 Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
Sole02G0010960 Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH
Sole02G0011710 Terpenoid BAHD medium pass BAHD__00060__sp_Q8VYP5_ZDH14_ARATH
Sole02G0012110 Terpenoid BAHD medium pass BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
Sole02G0012440 Terpenoid BAHD medium pass BAHD__00059__sp_Q8S8S2_LPCT2_ARATH
Sole02G0012630 Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
Sole02G0013470 Terpenoid BAHD medium pass BAHD__00083__sp_Q9LMM0_GPAT4_ARATH
Sole02G0015720 Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
Sole02G0015850 Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Sole02G0015860 Terpenoid BAHD low borderline BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Sole02G0016480 Terpenoid BAHD medium pass BAHD__00047__sp_Q5KS41_WSD11_ARATH
Sole02G0016960 Terpenoid BAHD medium pass BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Sole02G0018670 Terpenoid BAHD low borderline BAHD__00066__sp_Q94CK0_WSD7_ARATH
Sole02G0018690 Terpenoid BAHD low borderline BAHD__00066__sp_Q94CK0_WSD7_ARATH
Sole02G0018700 Terpenoid BAHD low borderline BAHD__00047__sp_Q5KS41_WSD11_ARATH
Sole02G0018710 Terpenoid BAHD low borderline BAHD__00066__sp_Q94CK0_WSD7_ARATH
Sole02G0018720 Terpenoid BAHD low borderline BAHD__00066__sp_Q94CK0_WSD7_ARATH
Sole02G0020320 Terpenoid BAHD medium pass BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH
Sole02G0021020 Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
Sole02G0021030 Terpenoid BAHD medium pass BAHD__00055__sp_Q8H780_SCP13_ARATH
Sole02G0021220 Terpenoid BAHD medium pass BAHD__00048__sp_Q5M757_ZDH15_ARATH