PlantSME Plant secondary metabolism enzyme database

Spinacia oleracea (spinacia_oleracea)

Imported from atlas release summary for Spinacia oleracea.

1347
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.8% Phenylpropanoid pathway 23.68% Alkaloid pathway 19.82% Flavonoid pathway 13.96% Rosmarinic acid pathway 8.69% Steroid pathway 5.05%
Family Distribution
C4H 6.0% C3'H/CYP98A 5.88% BAHD 5.73% POD 5.64% UGT 4.47% 4CL 3.94% 7DLGT 3.73% UFGT 3.73%
Other Families 60.89%
More Families (97)
T3O 116 3.46% IFS 115 3.43% CYP76 110 3.28% F3H 109 3.25% DWF4/CYP90B1 82 2.45% NMT 81 2.42% CODM/T6ODM 74 2.21% F3'H/CYP75B 65 1.94% BR6OX2/CYP85A2 53 1.58% CYP71 53 1.58% CAD 50 1.49% TRI/TRII 44 1.31% H6H 44 1.31% STR 43 1.28% SMT1/SMT2/SMT3 39 1.16% HCT 36 1.07% CYP90D1 35 1.04% RAS 34 1.01% COMT 32 0.95% CAS 32 0.95% PYKS 30 0.89% SGD 29 0.87% SLS 29 0.87% GS 28 0.84% G8O/G8H 26 0.78% PMT 25 0.75% CSE 25 0.75% ANR 24 0.72% IFR 24 0.72% LAC 24 0.72% 7DLH 22 0.66% BBE 22 0.66% GES 22 0.66% F3'5'H/CYP75A 22 0.66% TPS 22 0.66% CYP51G1 20 0.6% T16H 18 0.54% CCR 18 0.54% IO 17 0.51% 16OMT 17 0.51% FNS 14 0.42% FPPS 14 0.42% CHS 13 0.39% CNMT 12 0.36% COR 12 0.36% DFR 12 0.36% F5H/CYP84A 12 0.36% NCS 11 0.33% ANS/LDOX 11 0.33% CPR 11 0.33% TAT 11 0.33% AACT 11 0.33% MPO 10 0.3% 8HGO 10 0.3% CCoAOMT 10 0.3% BR6OX1/CYP85A1 10 0.3% SQS/FDFT1 10 0.3% TDC 9 0.27% CPD/CYP90A1 9 0.27% DXR 8 0.24% HPPR 7 0.21% PAL 6 0.18% TYDC_DDC 5 0.15% DET2 5 0.15% ROT3/CYP90C1 5 0.15% GGPPS 5 0.15% DXS 5 0.15% ISY 4 0.12% XMT_MXMT_DXMT 4 0.12% MVK 4 0.12% LAMT 3 0.09% ADC 3 0.09% 6OMT_4OMT_SOMT 3 0.09% CHI 3 0.09% FLS 3 0.09% DWF5 3 0.09% SMO1/SMO2 3 0.09% SQE 3 0.09% MVD 3 0.09% IDI 3 0.09% HMGR 3 0.09% MCT/IspD 3 0.09% CYP80B1 2 0.06% CYP80F1 2 0.06% CYP719 2 0.06% DWF7 2 0.06% DWF1 2 0.06% HYD1 2 0.06% HDS/IspG 2 0.06% MDS/IspF 2 0.06% PMK 2 0.06% FK 1 0.03% CPI1 1 0.03% CMK/IspE 1 0.03% HMGS 1 0.03% GPPS 1 0.03% HDR/IspH 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 388 20 BAHD (143) View species results
Phenylpropanoid pathway 319 11 POD (170) View species results
Alkaloid pathway 267 18 7DLGT (52) View species results
Flavonoid pathway 188 11 UFGT (120) View species results
Rosmarinic acid pathway 117 7 C4H (44) View species results
Steroid pathway 68 13 SMT1/SMT2/SMT3 (25) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1223 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 262 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CHS
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Gene Pathway Family Confidence Status Best Target
Sole01G0004250 Flavonoid CHS medium pass CHS__00009__sp_Q9AU11_PKS1_RUBID
Sole01G0016830 Flavonoid CHS medium pass CHS__00007__sp_Q8RVK9_CHS_CANSA
Sole01G0016900 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
Sole04G0025260 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
Sole05G0019860 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
Sole06G0002100 Flavonoid CHS medium pass CHS__00003__sp_B0LDU6_PKS5_RUBID
SoleSpoScf_011030029330 Flavonoid CHS medium pass CHS__00007__sp_Q8RVK9_CHS_CANSA
SoleSpoScf_012360034190 Flavonoid CHS medium pass CHS__00009__sp_Q9AU11_PKS1_RUBID
SoleSpoScf_012360034230 Flavonoid CHS medium pass CHS__00009__sp_Q9AU11_PKS1_RUBID
SoleSpoScf_015670043660 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
SoleSpoScf_015720043830 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
SoleSpoScf_021970057010 Flavonoid CHS medium pass CHS__00007__sp_Q8RVK9_CHS_CANSA
SoleSpoScf_085430079470 Flavonoid CHS low borderline CHS__00006__sp_P30074_CHS2_MEDSA