PlantSME Plant secondary metabolism enzyme database

Spinacia oleracea (spinacia_oleracea)

Imported from atlas release summary for Spinacia oleracea.

1347
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.8% Phenylpropanoid pathway 23.68% Alkaloid pathway 19.82% Flavonoid pathway 13.96% Rosmarinic acid pathway 8.69% Steroid pathway 5.05%
Family Distribution
C4H 6.0% C3'H/CYP98A 5.88% BAHD 5.73% POD 5.64% UGT 4.47% 4CL 3.94% 7DLGT 3.73% UFGT 3.73%
Other Families 60.89%
More Families (97)
T3O 116 3.46% IFS 115 3.43% CYP76 110 3.28% F3H 109 3.25% DWF4/CYP90B1 82 2.45% NMT 81 2.42% CODM/T6ODM 74 2.21% F3'H/CYP75B 65 1.94% BR6OX2/CYP85A2 53 1.58% CYP71 53 1.58% CAD 50 1.49% TRI/TRII 44 1.31% H6H 44 1.31% STR 43 1.28% SMT1/SMT2/SMT3 39 1.16% HCT 36 1.07% CYP90D1 35 1.04% RAS 34 1.01% COMT 32 0.95% CAS 32 0.95% PYKS 30 0.89% SGD 29 0.87% SLS 29 0.87% GS 28 0.84% G8O/G8H 26 0.78% PMT 25 0.75% CSE 25 0.75% ANR 24 0.72% IFR 24 0.72% LAC 24 0.72% 7DLH 22 0.66% BBE 22 0.66% GES 22 0.66% F3'5'H/CYP75A 22 0.66% TPS 22 0.66% CYP51G1 20 0.6% T16H 18 0.54% CCR 18 0.54% IO 17 0.51% 16OMT 17 0.51% FNS 14 0.42% FPPS 14 0.42% CHS 13 0.39% CNMT 12 0.36% COR 12 0.36% DFR 12 0.36% F5H/CYP84A 12 0.36% NCS 11 0.33% ANS/LDOX 11 0.33% CPR 11 0.33% TAT 11 0.33% AACT 11 0.33% MPO 10 0.3% 8HGO 10 0.3% CCoAOMT 10 0.3% BR6OX1/CYP85A1 10 0.3% SQS/FDFT1 10 0.3% TDC 9 0.27% CPD/CYP90A1 9 0.27% DXR 8 0.24% HPPR 7 0.21% PAL 6 0.18% TYDC_DDC 5 0.15% DET2 5 0.15% ROT3/CYP90C1 5 0.15% GGPPS 5 0.15% DXS 5 0.15% ISY 4 0.12% XMT_MXMT_DXMT 4 0.12% MVK 4 0.12% LAMT 3 0.09% ADC 3 0.09% 6OMT_4OMT_SOMT 3 0.09% CHI 3 0.09% FLS 3 0.09% DWF5 3 0.09% SMO1/SMO2 3 0.09% SQE 3 0.09% MVD 3 0.09% IDI 3 0.09% HMGR 3 0.09% MCT/IspD 3 0.09% CYP80B1 2 0.06% CYP80F1 2 0.06% CYP719 2 0.06% DWF7 2 0.06% DWF1 2 0.06% HYD1 2 0.06% HDS/IspG 2 0.06% MDS/IspF 2 0.06% PMK 2 0.06% FK 1 0.03% CPI1 1 0.03% CMK/IspE 1 0.03% HMGS 1 0.03% GPPS 1 0.03% HDR/IspH 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 388 20 BAHD (143) View species results
Phenylpropanoid pathway 319 11 POD (170) View species results
Alkaloid pathway 267 18 7DLGT (52) View species results
Flavonoid pathway 188 11 UFGT (120) View species results
Rosmarinic acid pathway 117 7 C4H (44) View species results
Steroid pathway 68 13 SMT1/SMT2/SMT3 (25) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1223 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 262 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
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Gene Pathway Family Confidence Status
Sole01G0018700 Alkaloid GS low borderline
Sole01G0021440 Alkaloid GS low borderline
Sole01G0021450 Alkaloid GS low borderline
Sole01G0024510 Alkaloid GS low borderline
Sole02G0003470 Alkaloid GS low borderline
Sole03G0000460 Alkaloid GS low borderline
Sole03G0001920 Alkaloid GS medium pass
Sole03G0009770 Alkaloid GS high pass
Sole04G0010300 Alkaloid GS low borderline
Sole04G0033890 Alkaloid GS high pass
Sole05G0010960 Alkaloid GS medium pass
Sole06G0000630 Alkaloid GS medium pass
SoleSpoScf_004420009800 Alkaloid GS high pass
SoleSpoScf_004420009810 Alkaloid GS medium pass
SoleSpoScf_004420009820 Alkaloid GS medium pass
SoleSpoScf_005970013240 Alkaloid GS low borderline
SoleSpoScf_006330014820 Alkaloid GS low borderline
SoleSpoScf_009870025650 Alkaloid GS high pass
SoleSpoScf_011260030130 Alkaloid GS low borderline
SoleSpoScf_018110049460 Alkaloid GS medium pass
SoleSpoScf_018440050020 Alkaloid GS high pass
SoleSpoScf_018440050030 Alkaloid GS high pass
SoleSpoScf_020770054730 Alkaloid GS high pass
SoleSpoScf_020800054770 Alkaloid GS high pass
SoleSpoScf_027910066540 Alkaloid GS low borderline
SoleSpoScf_049090076950 Alkaloid GS medium pass
SoleSuper_scaffold_1140084620 Alkaloid GS low borderline
SoleSuper_scaffold_2070091270 Alkaloid GS low borderline