Spinacia oleracea (spinacia_oleracea)
Imported from atlas release summary for Spinacia oleracea.
1347
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1347
Candidate Genes
C4H
6.0%
C3'H/CYP98A
5.88%
BAHD
5.73%
POD
5.64%
UGT
4.47%
4CL
3.94%
7DLGT
3.73%
UFGT
3.73%
Other Families
60.89%
More Families (97)
T3O
116
3.46%
IFS
115
3.43%
CYP76
110
3.28%
F3H
109
3.25%
DWF4/CYP90B1
82
2.45%
NMT
81
2.42%
CODM/T6ODM
74
2.21%
F3'H/CYP75B
65
1.94%
BR6OX2/CYP85A2
53
1.58%
CYP71
53
1.58%
CAD
50
1.49%
TRI/TRII
44
1.31%
H6H
44
1.31%
STR
43
1.28%
SMT1/SMT2/SMT3
39
1.16%
HCT
36
1.07%
CYP90D1
35
1.04%
RAS
34
1.01%
COMT
32
0.95%
CAS
32
0.95%
PYKS
30
0.89%
SGD
29
0.87%
SLS
29
0.87%
GS
28
0.84%
G8O/G8H
26
0.78%
PMT
25
0.75%
CSE
25
0.75%
ANR
24
0.72%
IFR
24
0.72%
LAC
24
0.72%
7DLH
22
0.66%
BBE
22
0.66%
GES
22
0.66%
F3'5'H/CYP75A
22
0.66%
TPS
22
0.66%
CYP51G1
20
0.6%
T16H
18
0.54%
CCR
18
0.54%
IO
17
0.51%
16OMT
17
0.51%
FNS
14
0.42%
FPPS
14
0.42%
CHS
13
0.39%
CNMT
12
0.36%
COR
12
0.36%
DFR
12
0.36%
F5H/CYP84A
12
0.36%
NCS
11
0.33%
ANS/LDOX
11
0.33%
CPR
11
0.33%
TAT
11
0.33%
AACT
11
0.33%
MPO
10
0.3%
8HGO
10
0.3%
CCoAOMT
10
0.3%
BR6OX1/CYP85A1
10
0.3%
SQS/FDFT1
10
0.3%
TDC
9
0.27%
CPD/CYP90A1
9
0.27%
DXR
8
0.24%
HPPR
7
0.21%
PAL
6
0.18%
TYDC_DDC
5
0.15%
DET2
5
0.15%
ROT3/CYP90C1
5
0.15%
GGPPS
5
0.15%
DXS
5
0.15%
ISY
4
0.12%
XMT_MXMT_DXMT
4
0.12%
MVK
4
0.12%
LAMT
3
0.09%
ADC
3
0.09%
6OMT_4OMT_SOMT
3
0.09%
CHI
3
0.09%
FLS
3
0.09%
DWF5
3
0.09%
SMO1/SMO2
3
0.09%
SQE
3
0.09%
MVD
3
0.09%
IDI
3
0.09%
HMGR
3
0.09%
MCT/IspD
3
0.09%
CYP80B1
2
0.06%
CYP80F1
2
0.06%
CYP719
2
0.06%
DWF7
2
0.06%
DWF1
2
0.06%
HYD1
2
0.06%
HDS/IspG
2
0.06%
MDS/IspF
2
0.06%
PMK
2
0.06%
FK
1
0.03%
CPI1
1
0.03%
CMK/IspE
1
0.03%
HMGS
1
0.03%
GPPS
1
0.03%
HDR/IspH
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 388 | 20 | BAHD (143) | View species results |
| Phenylpropanoid pathway | 319 | 11 | POD (170) | View species results |
| Alkaloid pathway | 267 | 18 | 7DLGT (52) | View species results |
| Flavonoid pathway | 188 | 11 | UFGT (120) | View species results |
| Rosmarinic acid pathway | 117 | 7 | C4H (44) | View species results |
| Steroid pathway | 68 | 13 | SMT1/SMT2/SMT3 (25) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1223 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 262 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Sole01G0001760 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sole01G0010720 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sole01G0019950 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sole01G0024620 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sole02G0008590 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sole02G0010520 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sole02G0019490 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sole02G0022520 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sole03G0004030 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sole03G0011850 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Sole03G0025090 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sole03G0027070 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sole04G0003360 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sole04G0006630 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sole04G0013940 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sole04G0017260 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sole04G0023420 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sole04G0025130 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sole04G0025150 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sole06G0007330 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sole06G0009520 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Sole06G0010760 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SoleSpoScf_002790006070 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SoleSpoScf_004240008790 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| SoleSpoScf_007040017430 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SoleSpoScf_007110017970 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SoleSpoScf_007520018810 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SoleSpoScf_008280020540 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SoleSpoScf_010230027130 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SoleSpoScf_011150029710 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SoleSpoScf_012800035520 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SoleSpoScf_013110036260 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SoleSpoScf_016270045190 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SoleSpoScf_016340045320 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SoleSpoScf_016340045340 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SoleSpoScf_016340045350 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SoleSpoScf_017610048420 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SoleSpoScf_024620061840 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SoleSpoScf_028430067190 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SoleSuper_scaffold_1140084470 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SoleSuper_scaffold_1530088260 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SoleSuper_scaffold_1600088700 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| SoleSuper_scaffold_660095220 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |