PlantSME Plant secondary metabolism enzyme database

Spinacia oleracea (spinacia_oleracea)

Imported from atlas release summary for Spinacia oleracea.

1347
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.8% Phenylpropanoid pathway 23.68% Alkaloid pathway 19.82% Flavonoid pathway 13.96% Rosmarinic acid pathway 8.69% Steroid pathway 5.05%
Family Distribution
C4H 6.0% C3'H/CYP98A 5.88% BAHD 5.73% POD 5.64% UGT 4.47% 4CL 3.94% 7DLGT 3.73% UFGT 3.73%
Other Families 60.89%
More Families (97)
T3O 116 3.46% IFS 115 3.43% CYP76 110 3.28% F3H 109 3.25% DWF4/CYP90B1 82 2.45% NMT 81 2.42% CODM/T6ODM 74 2.21% F3'H/CYP75B 65 1.94% BR6OX2/CYP85A2 53 1.58% CYP71 53 1.58% CAD 50 1.49% TRI/TRII 44 1.31% H6H 44 1.31% STR 43 1.28% SMT1/SMT2/SMT3 39 1.16% HCT 36 1.07% CYP90D1 35 1.04% RAS 34 1.01% COMT 32 0.95% CAS 32 0.95% PYKS 30 0.89% SGD 29 0.87% SLS 29 0.87% GS 28 0.84% G8O/G8H 26 0.78% PMT 25 0.75% CSE 25 0.75% ANR 24 0.72% IFR 24 0.72% LAC 24 0.72% 7DLH 22 0.66% BBE 22 0.66% GES 22 0.66% F3'5'H/CYP75A 22 0.66% TPS 22 0.66% CYP51G1 20 0.6% T16H 18 0.54% CCR 18 0.54% IO 17 0.51% 16OMT 17 0.51% FNS 14 0.42% FPPS 14 0.42% CHS 13 0.39% CNMT 12 0.36% COR 12 0.36% DFR 12 0.36% F5H/CYP84A 12 0.36% NCS 11 0.33% ANS/LDOX 11 0.33% CPR 11 0.33% TAT 11 0.33% AACT 11 0.33% MPO 10 0.3% 8HGO 10 0.3% CCoAOMT 10 0.3% BR6OX1/CYP85A1 10 0.3% SQS/FDFT1 10 0.3% TDC 9 0.27% CPD/CYP90A1 9 0.27% DXR 8 0.24% HPPR 7 0.21% PAL 6 0.18% TYDC_DDC 5 0.15% DET2 5 0.15% ROT3/CYP90C1 5 0.15% GGPPS 5 0.15% DXS 5 0.15% ISY 4 0.12% XMT_MXMT_DXMT 4 0.12% MVK 4 0.12% LAMT 3 0.09% ADC 3 0.09% 6OMT_4OMT_SOMT 3 0.09% CHI 3 0.09% FLS 3 0.09% DWF5 3 0.09% SMO1/SMO2 3 0.09% SQE 3 0.09% MVD 3 0.09% IDI 3 0.09% HMGR 3 0.09% MCT/IspD 3 0.09% CYP80B1 2 0.06% CYP80F1 2 0.06% CYP719 2 0.06% DWF7 2 0.06% DWF1 2 0.06% HYD1 2 0.06% HDS/IspG 2 0.06% MDS/IspF 2 0.06% PMK 2 0.06% FK 1 0.03% CPI1 1 0.03% CMK/IspE 1 0.03% HMGS 1 0.03% GPPS 1 0.03% HDR/IspH 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 388 20 BAHD (143) View species results
Phenylpropanoid pathway 319 11 POD (170) View species results
Alkaloid pathway 267 18 7DLGT (52) View species results
Flavonoid pathway 188 11 UFGT (120) View species results
Rosmarinic acid pathway 117 7 C4H (44) View species results
Steroid pathway 68 13 SMT1/SMT2/SMT3 (25) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1223 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 262 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
Sole01G0005600 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Sole01G0012170 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
Sole01G0024990 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Sole02G0000590 Alkaloid NMT low borderline NMT__00059__sp_Q9M571_PEAMT_SPIOL
Sole02G0003020 Alkaloid NMT medium pass NMT__00032__sp_Q5PP37_ATXR2_ARATH
Sole02G0008800 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
Sole02G0008810 Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Sole02G0010320 Alkaloid NMT low borderline NMT__00016__sp_F4JNX3_CMKMT_ARATH
Sole02G0016780 Alkaloid NMT medium borderline NMT__00058__sp_Q9FZN8_TCS1_CAMSI
Sole02G0018660 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Sole02G0020020 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Sole02G0020390 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
Sole02G0021840 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Sole02G0022310 Alkaloid NMT medium pass NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
Sole03G0003770 Alkaloid NMT medium pass NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Sole03G0005210 Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
Sole03G0005920 Alkaloid NMT medium pass NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Sole03G0007000 Alkaloid NMT medium pass NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Sole03G0008850 Alkaloid NMT medium borderline NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
Sole03G0018970 Alkaloid NMT medium pass NMT__00016__sp_F4JNX3_CMKMT_ARATH
Sole03G0019130 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Sole03G0020290 Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
Sole03G0021240 Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Sole03G0027940 Alkaloid NMT low borderline NMT__00018__sp_I1M2U5_NAMT1_SOYBN
Sole04G0002080 Alkaloid NMT low borderline NMT__00041__sp_Q8GWT4_ANM15_ARATH
Sole04G0019740 Alkaloid NMT medium pass NMT__00040__sp_Q84WW6_ASHH1_ARATH
Sole04G0021370 Alkaloid NMT medium borderline NMT__00052__sp_Q9AVJ9_MXMT1_COFAR
Sole04G0022890 Alkaloid NMT low borderline NMT__00060__sp_Q9MAT5_ANM10_ARATH
Sole04G0029600 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Sole04G0030980 Alkaloid NMT medium pass NMT__00061__sp_Q9SAH5_PLMT_ARATH
Sole04G0032920 Alkaloid NMT medium pass NMT__00035__sp_Q6K431_TRX1_ORYSJ
Sole05G0001140 Alkaloid NMT medium pass NMT__00069__sp_Q9ZSM8_EZA1_ARATH
Sole05G0006080 Alkaloid NMT medium borderline NMT__00038__sp_Q84PP7_MXMT2_COFAR
Sole05G0006090 Alkaloid NMT medium borderline NMT__00052__sp_Q9AVJ9_MXMT1_COFAR
Sole05G0006100 Alkaloid NMT medium borderline NMT__00043__sp_Q8H0D2_DXMT1_COFAR
Sole05G0007220 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
Sole05G0010420 Alkaloid NMT low borderline NMT__00067__sp_Q9T0G7_SUVH9_ARATH
Sole05G0016240 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Sole05G0016260 Alkaloid NMT medium borderline NMT__00018__sp_I1M2U5_NAMT1_SOYBN
Sole05G0018370 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
Sole05G0018450 Alkaloid NMT medium pass NMT__00019__sp_O22781_SUVH2_ARATH
Sole06G0002180 Alkaloid NMT medium pass NMT__00068__sp_Q9XI84_RBCMT_ARATH
Sole06G0004040 Alkaloid NMT low borderline NMT__00054__sp_Q9FF80_SUVH1_ARATH
Sole06G0006370 Alkaloid NMT medium pass NMT__00055__sp_Q9FNC7_SUVR2_ARATH
Sole06G0010900 Alkaloid NMT low borderline NMT__00066__sp_Q9SU94_ANM11_ARATH
Sole06G0011190 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Sole06G0017170 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Sole06G0017180 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Sole06G0017210 Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Sole06G0017450 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH