Spinacia oleracea (spinacia_oleracea)
Imported from atlas release summary for Spinacia oleracea.
1347
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1347
Candidate Genes
C4H
6.0%
C3'H/CYP98A
5.88%
BAHD
5.73%
POD
5.64%
UGT
4.47%
4CL
3.94%
7DLGT
3.73%
UFGT
3.73%
Other Families
60.89%
More Families (97)
T3O
116
3.46%
IFS
115
3.43%
CYP76
110
3.28%
F3H
109
3.25%
DWF4/CYP90B1
82
2.45%
NMT
81
2.42%
CODM/T6ODM
74
2.21%
F3'H/CYP75B
65
1.94%
BR6OX2/CYP85A2
53
1.58%
CYP71
53
1.58%
CAD
50
1.49%
TRI/TRII
44
1.31%
H6H
44
1.31%
STR
43
1.28%
SMT1/SMT2/SMT3
39
1.16%
HCT
36
1.07%
CYP90D1
35
1.04%
RAS
34
1.01%
COMT
32
0.95%
CAS
32
0.95%
PYKS
30
0.89%
SGD
29
0.87%
SLS
29
0.87%
GS
28
0.84%
G8O/G8H
26
0.78%
PMT
25
0.75%
CSE
25
0.75%
ANR
24
0.72%
IFR
24
0.72%
LAC
24
0.72%
7DLH
22
0.66%
BBE
22
0.66%
GES
22
0.66%
F3'5'H/CYP75A
22
0.66%
TPS
22
0.66%
CYP51G1
20
0.6%
T16H
18
0.54%
CCR
18
0.54%
IO
17
0.51%
16OMT
17
0.51%
FNS
14
0.42%
FPPS
14
0.42%
CHS
13
0.39%
CNMT
12
0.36%
COR
12
0.36%
DFR
12
0.36%
F5H/CYP84A
12
0.36%
NCS
11
0.33%
ANS/LDOX
11
0.33%
CPR
11
0.33%
TAT
11
0.33%
AACT
11
0.33%
MPO
10
0.3%
8HGO
10
0.3%
CCoAOMT
10
0.3%
BR6OX1/CYP85A1
10
0.3%
SQS/FDFT1
10
0.3%
TDC
9
0.27%
CPD/CYP90A1
9
0.27%
DXR
8
0.24%
HPPR
7
0.21%
PAL
6
0.18%
TYDC_DDC
5
0.15%
DET2
5
0.15%
ROT3/CYP90C1
5
0.15%
GGPPS
5
0.15%
DXS
5
0.15%
ISY
4
0.12%
XMT_MXMT_DXMT
4
0.12%
MVK
4
0.12%
LAMT
3
0.09%
ADC
3
0.09%
6OMT_4OMT_SOMT
3
0.09%
CHI
3
0.09%
FLS
3
0.09%
DWF5
3
0.09%
SMO1/SMO2
3
0.09%
SQE
3
0.09%
MVD
3
0.09%
IDI
3
0.09%
HMGR
3
0.09%
MCT/IspD
3
0.09%
CYP80B1
2
0.06%
CYP80F1
2
0.06%
CYP719
2
0.06%
DWF7
2
0.06%
DWF1
2
0.06%
HYD1
2
0.06%
HDS/IspG
2
0.06%
MDS/IspF
2
0.06%
PMK
2
0.06%
FK
1
0.03%
CPI1
1
0.03%
CMK/IspE
1
0.03%
HMGS
1
0.03%
GPPS
1
0.03%
HDR/IspH
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 388 | 20 | BAHD (143) | View species results |
| Phenylpropanoid pathway | 319 | 11 | POD (170) | View species results |
| Alkaloid pathway | 267 | 18 | 7DLGT (52) | View species results |
| Flavonoid pathway | 188 | 11 | UFGT (120) | View species results |
| Rosmarinic acid pathway | 117 | 7 | C4H (44) | View species results |
| Steroid pathway | 68 | 13 | SMT1/SMT2/SMT3 (25) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1223 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 262 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Sole06G0018080 | Alkaloid | NMT | low | borderline | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| Sole06G0019540 | Alkaloid | NMT | medium | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| SoleSpoScf_001890004130 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| SoleSpoScf_006470015190 | Alkaloid | NMT | medium | pass | NMT__00023__sp_O82210_ANM12_ARATH |
| SoleSpoScf_006690016320 | Alkaloid | NMT | medium | borderline | NMT__00005__sp_A0A6C0WW36_CKTCS_CAMSB |
| SoleSpoScf_007090017820 | Alkaloid | NMT | medium | pass | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| SoleSpoScf_008180020380 | Alkaloid | NMT | medium | borderline | NMT__00058__sp_Q9FZN8_TCS1_CAMSI |
| SoleSpoScf_008360020780 | Alkaloid | NMT | low | borderline | NMT__00036__sp_Q6K9X3_NAMT1_ORYSJ |
| SoleSpoScf_008440020860 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| SoleSpoScf_009260023540 | Alkaloid | NMT | low | borderline | NMT__00018__sp_I1M2U5_NAMT1_SOYBN |
| SoleSpoScf_009900025720 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| SoleSpoScf_012090033390 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| SoleSpoScf_017400047920 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| SoleSpoScf_017710048650 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| SoleSpoScf_018200049680 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| SoleSpoScf_019240051700 | Alkaloid | NMT | low | borderline | NMT__00040__sp_Q84WW6_ASHH1_ARATH |
| SoleSpoScf_023760060440 | Alkaloid | NMT | low | borderline | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| SoleSpoScf_026720064920 | Alkaloid | NMT | medium | pass | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| SoleSpoScf_028420067150 | Alkaloid | NMT | medium | borderline | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| SoleSpoScf_031870070100 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| SoleSpoScf_035350072010 | Alkaloid | NMT | medium | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| SoleSpoScf_040440074540 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| SoleSpoScf_048210076710 | Alkaloid | NMT | medium | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| SoleSpoScf_057500078010 | Alkaloid | NMT | medium | pass | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| SoleSuper_scaffold_1430087490 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| SoleSuper_scaffold_1430087510 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| SoleSuper_scaffold_1530088310 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| SoleSuper_scaffold_650095010 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| SoleSuper_scaffold_660095190 | Alkaloid | NMT | low | borderline | NMT__00036__sp_Q6K9X3_NAMT1_ORYSJ |
| SoleSuper_scaffold_890096920 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| SoleSuper_scaffold_960097440 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |