PlantSME Plant secondary metabolism enzyme database

Spinacia oleracea (spinacia_oleracea)

Imported from atlas release summary for Spinacia oleracea.

1347
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.8% Phenylpropanoid pathway 23.68% Alkaloid pathway 19.82% Flavonoid pathway 13.96% Rosmarinic acid pathway 8.69% Steroid pathway 5.05%
Family Distribution
C4H 6.0% C3'H/CYP98A 5.88% BAHD 5.73% POD 5.64% UGT 4.47% 4CL 3.94% 7DLGT 3.73% UFGT 3.73%
Other Families 60.89%
More Families (97)
T3O 116 3.46% IFS 115 3.43% CYP76 110 3.28% F3H 109 3.25% DWF4/CYP90B1 82 2.45% NMT 81 2.42% CODM/T6ODM 74 2.21% F3'H/CYP75B 65 1.94% BR6OX2/CYP85A2 53 1.58% CYP71 53 1.58% CAD 50 1.49% TRI/TRII 44 1.31% H6H 44 1.31% STR 43 1.28% SMT1/SMT2/SMT3 39 1.16% HCT 36 1.07% CYP90D1 35 1.04% RAS 34 1.01% COMT 32 0.95% CAS 32 0.95% PYKS 30 0.89% SGD 29 0.87% SLS 29 0.87% GS 28 0.84% G8O/G8H 26 0.78% PMT 25 0.75% CSE 25 0.75% ANR 24 0.72% IFR 24 0.72% LAC 24 0.72% 7DLH 22 0.66% BBE 22 0.66% GES 22 0.66% F3'5'H/CYP75A 22 0.66% TPS 22 0.66% CYP51G1 20 0.6% T16H 18 0.54% CCR 18 0.54% IO 17 0.51% 16OMT 17 0.51% FNS 14 0.42% FPPS 14 0.42% CHS 13 0.39% CNMT 12 0.36% COR 12 0.36% DFR 12 0.36% F5H/CYP84A 12 0.36% NCS 11 0.33% ANS/LDOX 11 0.33% CPR 11 0.33% TAT 11 0.33% AACT 11 0.33% MPO 10 0.3% 8HGO 10 0.3% CCoAOMT 10 0.3% BR6OX1/CYP85A1 10 0.3% SQS/FDFT1 10 0.3% TDC 9 0.27% CPD/CYP90A1 9 0.27% DXR 8 0.24% HPPR 7 0.21% PAL 6 0.18% TYDC_DDC 5 0.15% DET2 5 0.15% ROT3/CYP90C1 5 0.15% GGPPS 5 0.15% DXS 5 0.15% ISY 4 0.12% XMT_MXMT_DXMT 4 0.12% MVK 4 0.12% LAMT 3 0.09% ADC 3 0.09% 6OMT_4OMT_SOMT 3 0.09% CHI 3 0.09% FLS 3 0.09% DWF5 3 0.09% SMO1/SMO2 3 0.09% SQE 3 0.09% MVD 3 0.09% IDI 3 0.09% HMGR 3 0.09% MCT/IspD 3 0.09% CYP80B1 2 0.06% CYP80F1 2 0.06% CYP719 2 0.06% DWF7 2 0.06% DWF1 2 0.06% HYD1 2 0.06% HDS/IspG 2 0.06% MDS/IspF 2 0.06% PMK 2 0.06% FK 1 0.03% CPI1 1 0.03% CMK/IspE 1 0.03% HMGS 1 0.03% GPPS 1 0.03% HDR/IspH 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 388 20 BAHD (143) View species results
Phenylpropanoid pathway 319 11 POD (170) View species results
Alkaloid pathway 267 18 7DLGT (52) View species results
Flavonoid pathway 188 11 UFGT (120) View species results
Rosmarinic acid pathway 117 7 C4H (44) View species results
Steroid pathway 68 13 SMT1/SMT2/SMT3 (25) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1223 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 262 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Gene Pathway Family Confidence Status
SoleSpoScf_017350047700 Flavonoid UFGT high pass
SoleSpoScf_018130049540 Flavonoid UFGT high pass
SoleSpoScf_018870050920 Flavonoid UFGT medium pass
SoleSpoScf_018870050930 Flavonoid UFGT medium pass
SoleSpoScf_020240053580 Flavonoid UFGT medium pass
SoleSpoScf_026830065060 Flavonoid UFGT high pass
SoleSpoScf_026980065300 Flavonoid UFGT high pass
SoleSpoScf_028250066940 Flavonoid UFGT medium pass
SoleSpoScf_028250066960 Flavonoid UFGT high pass
SoleSpoScf_031390069760 Flavonoid UFGT medium pass
SoleSpoScf_034180071360 Flavonoid UFGT medium pass
SoleSpoScf_034390071470 Flavonoid UFGT medium pass
SoleSpoScf_036210072630 Flavonoid UFGT medium pass
SoleSpoScf_042440075040 Flavonoid UFGT medium pass
SoleSpoScf_045620075910 Flavonoid UFGT medium pass
SoleSpoScf_100460079780 Flavonoid UFGT high pass
SoleSpoScf_173720081050 Flavonoid UFGT high pass
SoleSuper_scaffold_1140084580 Flavonoid UFGT high pass
SoleSuper_scaffold_1220085550 Flavonoid UFGT medium pass
SoleSuper_scaffold_1330086690 Flavonoid UFGT low borderline
SoleSuper_scaffold_1380087230 Flavonoid UFGT medium pass
SoleSuper_scaffold_1430087640 Flavonoid UFGT high pass
SoleSuper_scaffold_2050091000 Flavonoid UFGT medium pass
SoleSuper_scaffold_2110091500 Flavonoid UFGT medium pass
SoleSuper_scaffold_450093600 Flavonoid UFGT high pass