PlantSME Plant secondary metabolism enzyme database

Spinacia oleracea (spinacia_oleracea)

Imported from atlas release summary for Spinacia oleracea.

1347
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 388 20 BAHD (143) View species results
Phenylpropanoid pathway 319 11 POD (170) View species results
Alkaloid pathway 267 18 7DLGT (52) View species results
Flavonoid pathway 188 11 UFGT (120) View species results
Rosmarinic acid pathway 117 7 C4H (44) View species results
Steroid pathway 68 13 SMT1/SMT2/SMT3 (25) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1223 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 262 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Sole06G0015220 Alkaloid 7DLGT low borderline
Sole06G0016650 Alkaloid 7DLGT low borderline
Sole06G0017690 Alkaloid 7DLGT low borderline
Sole06G0018830 Alkaloid 7DLGT low borderline
SoleSpoScf_000600000570 Alkaloid 7DLGT low borderline
SoleSpoScf_001460003060 Alkaloid 7DLGT low borderline
SoleSpoScf_004080008190 Alkaloid 7DLGT low borderline
SoleSpoScf_005080011040 Alkaloid 7DLGT low borderline
SoleSpoScf_005960013130 Alkaloid 7DLGT medium pass
SoleSpoScf_008680021480 Alkaloid 7DLGT low borderline
SoleSpoScf_008730021640 Alkaloid 7DLGT medium pass
SoleSpoScf_009030022770 Alkaloid 7DLGT medium pass
SoleSpoScf_009870025680 Alkaloid 7DLGT medium pass
SoleSpoScf_009870025690 Alkaloid 7DLGT low borderline
SoleSpoScf_011820032380 Alkaloid 7DLGT medium pass
SoleSpoScf_012560034690 Alkaloid 7DLGT medium pass
SoleSpoScf_012560034710 Alkaloid 7DLGT low borderline
SoleSpoScf_013550037480 Alkaloid 7DLGT medium pass
SoleSpoScf_016400045590 Alkaloid 7DLGT low borderline
SoleSpoScf_016630046010 Alkaloid 7DLGT medium pass
SoleSpoScf_016630046020 Alkaloid 7DLGT medium pass
SoleSpoScf_017350047700 Alkaloid 7DLGT high pass
SoleSpoScf_018130049540 Alkaloid 7DLGT medium pass
SoleSpoScf_018870050920 Alkaloid 7DLGT medium pass
SoleSpoScf_018870050930 Alkaloid 7DLGT high pass
SoleSpoScf_020240053580 Alkaloid 7DLGT low borderline
SoleSpoScf_026830065060 Alkaloid 7DLGT low borderline
SoleSpoScf_026980065300 Alkaloid 7DLGT low borderline
SoleSpoScf_028250066940 Alkaloid 7DLGT high pass
SoleSpoScf_028250066960 Alkaloid 7DLGT high pass
SoleSpoScf_031390069760 Alkaloid 7DLGT low borderline
SoleSpoScf_034180071360 Alkaloid 7DLGT low borderline
SoleSpoScf_034390071470 Alkaloid 7DLGT low borderline
SoleSpoScf_036210072630 Alkaloid 7DLGT low borderline
SoleSpoScf_042440075040 Alkaloid 7DLGT high pass
SoleSpoScf_045620075910 Alkaloid 7DLGT low borderline
SoleSpoScf_100460079780 Alkaloid 7DLGT low borderline
SoleSpoScf_173720081050 Alkaloid 7DLGT medium pass
SoleSuper_scaffold_1140084580 Alkaloid 7DLGT medium pass
SoleSuper_scaffold_1220085550 Alkaloid 7DLGT medium pass
SoleSuper_scaffold_1380087230 Alkaloid 7DLGT low borderline
SoleSuper_scaffold_1430087640 Alkaloid 7DLGT medium pass
SoleSuper_scaffold_2050091000 Alkaloid 7DLGT medium pass
SoleSuper_scaffold_2110091500 Alkaloid 7DLGT low borderline
SoleSuper_scaffold_450093600 Alkaloid 7DLGT medium pass
Sole01G0006490 Alkaloid 7DLH low borderline
Sole02G0006700 Alkaloid 7DLH medium borderline
Sole02G0019460 Alkaloid 7DLH medium borderline
Sole03G0003830 Alkaloid 7DLH medium borderline
Sole03G0003840 Alkaloid 7DLH medium borderline