PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2639
Candidate Protein Records
2149
Pathway-Level Records
5151
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Atha05G0042200.1 Rosmarinic Acid C4H low borderline
Atha05G0042210.1 Rosmarinic Acid C4H low borderline
Atha05G0042210.2 Rosmarinic Acid C4H low borderline
Atha05G0042210.3 Rosmarinic Acid C4H low borderline
Atha05G0042210.4 Rosmarinic Acid C4H low borderline
Atha05G0042210.5 Rosmarinic Acid C4H low borderline
Atha05G0042210.6 Rosmarinic Acid C4H low borderline
Atha05G0042210.7 Rosmarinic Acid C4H low borderline
Atha05G0052210.1 Rosmarinic Acid C4H medium pass
Atha05G0052250.1 Rosmarinic Acid C4H low borderline
Atha05G0056530.1 Rosmarinic Acid C4H low borderline
Atha05G0062970.1 Rosmarinic Acid C4H medium pass
Atha01G0020300.1 Rosmarinic Acid CPR low borderline
Atha01G0020300.2 Rosmarinic Acid CPR low borderline
Atha01G0020300.3 Rosmarinic Acid CPR low borderline
Atha03G0001550.1 Rosmarinic Acid CPR medium pass
Atha03G0001550.2 Rosmarinic Acid CPR medium pass
Atha03G0001550.3 Rosmarinic Acid CPR medium pass
Atha03G0026290.1 Rosmarinic Acid CPR medium pass
Atha03G0042300.1 Rosmarinic Acid CPR medium pass
Atha03G0042300.2 Rosmarinic Acid CPR medium pass
Atha03G0042300.3 Rosmarinic Acid CPR medium pass
Atha04G0024840.1 Rosmarinic Acid CPR medium pass
Atha04G0024840.2 Rosmarinic Acid CPR medium pass
Atha04G0031070.1 Rosmarinic Acid CPR medium pass
Atha04G0031070.2 Rosmarinic Acid CPR medium pass
Atha04G0031070.3 Rosmarinic Acid CPR medium pass
Atha05G0061740.1 Rosmarinic Acid CPR low borderline
Atha05G0061740.2 Rosmarinic Acid CPR low borderline
Atha01G0012510.1 Rosmarinic Acid HPPR medium pass
Atha01G0070380.1 Rosmarinic Acid HPPR medium pass
Atha01G0070380.2 Rosmarinic Acid HPPR medium pass
Atha02G0040530.2 Rosmarinic Acid HPPR medium pass
Atha05G0027260.1 Rosmarinic Acid HPPR low borderline
Atha02G0031280.1 Rosmarinic Acid PAL high pass
Atha03G0009980.1 Rosmarinic Acid PAL high pass
Atha03G0043860.1 Rosmarinic Acid PAL high pass
Atha05G0003480.1 Rosmarinic Acid PAL high pass
Atha05G0003480.2 Rosmarinic Acid PAL high pass
Atha01G0020370.1 Rosmarinic Acid RAS low borderline
Atha01G0027580.1 Rosmarinic Acid RAS medium pass
Atha01G0027970.1 Rosmarinic Acid RAS low borderline
Atha01G0066190.1 Rosmarinic Acid RAS low borderline
Atha02G0010800.1 Rosmarinic Acid RAS low borderline
Atha02G0010800.2 Rosmarinic Acid RAS low borderline
Atha02G0012150.1 Rosmarinic Acid RAS medium pass
Atha02G0034690.1 Rosmarinic Acid RAS low borderline
Atha02G0039580.1 Rosmarinic Acid RAS low borderline
Atha03G0025280.1 Rosmarinic Acid RAS low borderline
Atha03G0038240.1 Rosmarinic Acid RAS low borderline