PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2639
Candidate Protein Records
2149
Pathway-Level Records
5151
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Atha03G0038240.2 Rosmarinic Acid RAS low borderline
Atha03G0041770.1 Rosmarinic Acid RAS low borderline
Atha04G0012430.1 Rosmarinic Acid RAS low borderline
Atha04G0029680.1 Rosmarinic Acid RAS low borderline
Atha04G0036340.1 Rosmarinic Acid RAS low borderline
Atha04G0036340.2 Rosmarinic Acid RAS low borderline
Atha04G0036340.3 Rosmarinic Acid RAS low borderline
Atha04G0036340.4 Rosmarinic Acid RAS low borderline
Atha04G0036340.5 Rosmarinic Acid RAS low borderline
Atha04G0037380.1 Rosmarinic Acid RAS low borderline
Atha05G0006540.1 Rosmarinic Acid RAS medium pass
Atha05G0034430.1 Rosmarinic Acid RAS medium pass
Atha05G0034430.2 Rosmarinic Acid RAS medium pass
Atha05G0040020.1 Rosmarinic Acid RAS low borderline
Atha05G0043270.1 Rosmarinic Acid RAS medium pass
Atha05G0052870.1 Rosmarinic Acid RAS medium pass
Atha05G0054270.1 Rosmarinic Acid RAS low borderline
Atha05G0054270.2 Rosmarinic Acid RAS low borderline
Atha05G0058150.1 Rosmarinic Acid RAS low borderline
Atha05G0058150.2 Rosmarinic Acid RAS low borderline
Atha01G0024940.1 Rosmarinic Acid TAT medium pass
Atha01G0024940.2 Rosmarinic Acid TAT medium pass
Atha01G0024950.1 Rosmarinic Acid TAT medium pass
Atha01G0031400.1 Rosmarinic Acid TAT low borderline
Atha01G0070900.1 Rosmarinic Acid TAT medium pass
Atha01G0070900.2 Rosmarinic Acid TAT medium pass
Atha01G0070900.3 Rosmarinic Acid TAT medium pass
Atha01G0070900.4 Rosmarinic Acid TAT medium pass
Atha02G0013740.1 Rosmarinic Acid TAT medium pass
Atha02G0013740.2 Rosmarinic Acid TAT medium pass
Atha02G0015560.1 Rosmarinic Acid TAT low borderline
Atha02G0015560.2 Rosmarinic Acid TAT low borderline
Atha02G0015560.3 Rosmarinic Acid TAT low borderline
Atha02G0018250.1 Rosmarinic Acid TAT medium pass
Atha02G0034370.1 Rosmarinic Acid TAT low borderline
Atha03G0027650.1 Rosmarinic Acid TAT medium pass
Atha03G0032040.1 Rosmarinic Acid TAT medium pass
Atha04G0014440.1 Rosmarinic Acid TAT medium pass
Atha04G0014440.2 Rosmarinic Acid TAT medium pass
Atha04G0014470.1 Rosmarinic Acid TAT medium pass
Atha04G0023820.1 Rosmarinic Acid TAT medium pass
Atha04G0023830.1 Rosmarinic Acid TAT medium pass
Atha04G0023830.2 Rosmarinic Acid TAT medium pass
Atha04G0029080.1 Rosmarinic Acid TAT medium pass
Atha04G0029080.2 Rosmarinic Acid TAT medium pass
Atha04G0029090.1 Rosmarinic Acid TAT medium pass
Atha04G0029090.2 Rosmarinic Acid TAT medium pass
Atha05G0000240.1 Rosmarinic Acid TAT low borderline
Atha05G0029370.1 Rosmarinic Acid TAT medium pass
Atha05G0042160.1 Rosmarinic Acid TAT low borderline