Barbula amplexifolia (barbula_amplexifolia)
Imported from atlas release summary for Barbula amplexifolia.
691
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
691
Candidate Genes
C4H
6.85%
POD
5.63%
C3'H/CYP98A
5.57%
BAHD
5.38%
PAL
4.95%
4CL
4.4%
CYP76
4.16%
NMT
3.61%
Other Families
59.45%
More Families (95)
STR
44
2.69%
IFS
41
2.51%
PYKS
38
2.32%
F3'H/CYP75B
38
2.32%
DWF4/CYP90B1
35
2.14%
F3H
34
2.08%
IFR
33
2.02%
BR6OX2/CYP85A2
32
1.96%
GS
30
1.83%
T3O
27
1.65%
UFGT
27
1.65%
CHS
27
1.65%
UGT
26
1.59%
7DLGT
25
1.53%
CODM/T6ODM
23
1.41%
IO
22
1.35%
CYP71
22
1.35%
SMT1/SMT2/SMT3
21
1.28%
CAD
20
1.22%
G8O/G8H
19
1.16%
TRI/TRII
15
0.92%
CAS
15
0.92%
H6H
14
0.86%
SLS
13
0.8%
T16H
13
0.8%
F3'5'H/CYP75A
13
0.8%
RAS
13
0.8%
HCT
12
0.73%
COMT
12
0.73%
CSE
10
0.61%
F5H/CYP84A
10
0.61%
CYP90D1
10
0.61%
SGD
9
0.55%
CCR
9
0.55%
LAC
9
0.55%
PMT
8
0.49%
7DLH
8
0.49%
ANR
8
0.49%
CPR
8
0.49%
BR6OX1/CYP85A1
8
0.49%
CYP80B1
7
0.43%
8HGO
7
0.43%
COR
7
0.43%
FNS
7
0.43%
SQS/FDFT1
7
0.43%
CPD/CYP90A1
7
0.43%
CNMT
6
0.37%
MPO
6
0.37%
16OMT
6
0.37%
LAMT
6
0.37%
TAT
5
0.31%
SQE
5
0.31%
AACT
5
0.31%
NCS
4
0.24%
TDC
4
0.24%
CHI
4
0.24%
DFR
4
0.24%
ROT3/CYP90C1
4
0.24%
DWF5
4
0.24%
GGPPS
4
0.24%
BBE
3
0.18%
FLS
3
0.18%
DET2
3
0.18%
MVK
3
0.18%
MVD
3
0.18%
ADC
2
0.12%
CYP719
2
0.12%
TYDC_DDC
2
0.12%
6OMT_4OMT_SOMT
2
0.12%
CCoAOMT
2
0.12%
CYP51G1
2
0.12%
DWF1
2
0.12%
HYD1
2
0.12%
SMO1/SMO2
2
0.12%
MDS/IspF
2
0.12%
HMGR
2
0.12%
DXS
2
0.12%
HDS/IspG
2
0.12%
DXR
2
0.12%
HDR/IspH
2
0.12%
MCT/IspD
2
0.12%
FPPS
2
0.12%
XMT_MXMT_DXMT
1
0.06%
ISY
1
0.06%
GES
1
0.06%
ANS/LDOX
1
0.06%
HPPR
1
0.06%
CPI1
1
0.06%
DWF7
1
0.06%
FK
1
0.06%
PMK
1
0.06%
HMGS
1
0.06%
CMK/IspE
1
0.06%
TPS
1
0.06%
IDI
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 180 | 12 | POD (89) | View species results |
| Terpenoid pathway | 152 | 19 | BAHD (64) | View species results |
| Alkaloid pathway | 132 | 19 | PYKS (28) | View species results |
| Flavonoid pathway | 107 | 11 | PAL (27) | View species results |
| Rosmarinic acid pathway | 81 | 7 | PAL (27) | View species results |
| Steroid pathway | 39 | 12 | CAS (13) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 604 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 113 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| BAampscaffold_30136310 | Terpenoid | BAHD | medium | pass | BAHD__00056__sp_Q8L5Y5_ZDH17_ARATH |
| BAampscaffold_40139820 | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| BAampscaffold_40140550 | Terpenoid | BAHD | low | borderline | BAHD__00025__sp_O64810_SCP10_ARATH |
| BAampscaffold_40147230 | Terpenoid | BAHD | medium | pass | BAHD__00005__sp_A0A161IUT7_DGAT1_CORAE |
| BAampscaffold_40149410 | Terpenoid | BAHD | medium | pass | BAHD__00026__sp_O64811_SCP9_ARATH |
| BAampscaffold_40149630 | Terpenoid | BAHD | medium | pass | BAHD__00074__sp_Q9FFQ7_FACT_ARATH |
| BAampscaffold_40149640 | Terpenoid | BAHD | medium | pass | BAHD__00074__sp_Q9FFQ7_FACT_ARATH |
| BAampscaffold_40149810 | Terpenoid | BAHD | medium | pass | BAHD__00017__sp_F4IDU4_MBOA1_ARATH |
| BAampscaffold_50158690 | Terpenoid | BAHD | medium | pass | BAHD__00088__sp_Q9M7Z1_ODB2_ARATH |
| BAampscaffold_50159960 | Terpenoid | BAHD | medium | pass | BAHD__00082__sp_Q9LLY4_LPAT1_BRANA |
| BAampscaffold_50160860 | Terpenoid | BAHD | medium | pass | BAHD__00034__sp_P10349_GPAT2_CUCMO |
| BAampscaffold_50161240 | Terpenoid | BAHD | medium | pass | BAHD__00057__sp_Q8L7R3_LPCT1_ARATH |
| BAampscaffold_50162210 | Terpenoid | BAHD | medium | pass | BAHD__00052__sp_Q8GWG0_GPAT9_ARATH |
| BAampscaffold_50169730 | Terpenoid | BAHD | medium | pass | BAHD__00023__sp_O22975_LPAAT_ARATH |
| BAampscaffold_50174720 | Terpenoid | BAHD | medium | pass | BAHD__00027__sp_O80437_GPAT6_ARATH |
| BAampscaffold_50175850 | Terpenoid | BAHD | low | borderline | BAHD__00088__sp_Q9M7Z1_ODB2_ARATH |
| BAampscaffold_60179070 | Terpenoid | BAHD | medium | pass | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| BAampscaffold_60182970 | Terpenoid | BAHD | medium | pass | BAHD__00068__sp_Q9C533_ZDHC1_ARATH |
| BAampscaffold_60185030 | Terpenoid | BAHD | medium | pass | BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH |
| BAampscaffold_60188920 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| BAampscaffold_60194490 | Terpenoid | BAHD | medium | pass | BAHD__00021__sp_K7K424_DAT2D_SOYBN |
| BAampscaffold_60197460 | Terpenoid | BAHD | medium | pass | BAHD__00059__sp_Q8S8S2_LPCT2_ARATH |
| BAampscaffold_60199890 | Terpenoid | BAHD | low | borderline | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| BAampscaffold_70203060 | Terpenoid | BAHD | low | borderline | BAHD__00018__sp_I1MRZ6_DAT32_SOYBN |
| BAampscaffold_70205460 | Terpenoid | BAHD | low | borderline | BAHD__00060__sp_Q8VYP5_ZDH14_ARATH |
| BAampscaffold_70210710 | Terpenoid | BAHD | medium | pass | BAHD__00068__sp_Q9C533_ZDHC1_ARATH |
| BAampscaffold_70213530 | Terpenoid | BAHD | medium | pass | BAHD__00074__sp_Q9FFQ7_FACT_ARATH |
| BAampscaffold_70215950 | Terpenoid | BAHD | medium | pass | BAHD__00022__sp_K7PEY4_RAM2_MEDTR |
| BAampscaffold_70217000 | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| BAampscaffold_80222140 | Terpenoid | BAHD | medium | pass | BAHD__00023__sp_O22975_LPAAT_ARATH |
| BAampscaffold_80222360 | Terpenoid | BAHD | medium | pass | BAHD__00036__sp_Q10L01_ZDHC9_ORYSJ |
| BAampscaffold_80223490 | Terpenoid | BAHD | medium | pass | BAHD__00074__sp_Q9FFQ7_FACT_ARATH |
| BAampscaffold_80225770 | Terpenoid | BAHD | low | borderline | BAHD__00088__sp_Q9M7Z1_ODB2_ARATH |
| BAampscaffold_80225950 | Terpenoid | BAHD | medium | pass | BAHD__00062__sp_Q93V61_LCAT3_ARATH |
| BAampscaffold_80227370 | Terpenoid | BAHD | medium | pass | BAHD__00017__sp_F4IDU4_MBOA1_ARATH |
| BAampscaffold_80230320 | Terpenoid | BAHD | low | borderline | BAHD__00088__sp_Q9M7Z1_ODB2_ARATH |
| BAampscaffold_80230450 | Terpenoid | BAHD | medium | pass | BAHD__00074__sp_Q9FFQ7_FACT_ARATH |
| BAampscaffold_80230700 | Terpenoid | BAHD | medium | pass | BAHD__00021__sp_K7K424_DAT2D_SOYBN |
| BAampscaffold_80233420 | Terpenoid | BAHD | medium | pass | BAHD__00005__sp_A0A161IUT7_DGAT1_CORAE |
| BAampscaffold_80234590 | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| BAampscaffold_80234720 | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| BAampscaffold_90238280 | Terpenoid | BAHD | medium | pass | BAHD__00021__sp_K7K424_DAT2D_SOYBN |
| BAampscaffold_90239410 | Terpenoid | BAHD | medium | pass | BAHD__00062__sp_Q93V61_LCAT3_ARATH |
| BAampscaffold_40138950 | Terpenoid | CMK/IspE | high | pass | CMK_IspE__00001__sp_O81014_ISPE_ARATH |
| BAampscaffold_10002010 | Terpenoid | CYP71 | low | borderline | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| BAampscaffold_100028670 | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| BAampscaffold_110037420 | Terpenoid | CYP71 | low | borderline | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| BAampscaffold_120060840 | Terpenoid | CYP71 | low | borderline | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| BAampscaffold_130066890 | Terpenoid | CYP71 | medium | pass | CYP71__00001__sp_Q8W4D0_CPY71_ARATH |
| BAampscaffold_30136180 | Terpenoid | CYP71 | medium | borderline | CYP71__00002__sp_W8JDE2_C71Y1_CATRO |