PlantSME Plant secondary metabolism enzyme database

Barbula amplexifolia (barbula_amplexifolia)

Imported from atlas release summary for Barbula amplexifolia.

691
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 180 12 POD (89) View species results
Terpenoid pathway 152 19 BAHD (64) View species results
Alkaloid pathway 132 19 PYKS (28) View species results
Flavonoid pathway 107 11 PAL (27) View species results
Rosmarinic acid pathway 81 7 PAL (27) View species results
Steroid pathway 39 12 CAS (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 604 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 113 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
BAampscaffold_50162150 Steroid DWF4/CYP90B1 low borderline
BAampscaffold_50166980 Steroid DWF4/CYP90B1 low borderline
BAampscaffold_60180940 Steroid DWF4/CYP90B1 low borderline
BAampscaffold_60186040 Steroid DWF4/CYP90B1 low borderline
BAampscaffold_70206190 Steroid DWF4/CYP90B1 low borderline
BAampscaffold_70208960 Steroid DWF4/CYP90B1 medium borderline
BAampscaffold_70214490 Steroid DWF4/CYP90B1 medium borderline
BAampscaffold_80224040 Steroid DWF4/CYP90B1 low borderline
BAampscaffold_80228770 Steroid DWF4/CYP90B1 low borderline
BAampscaffold_80231260 Steroid DWF4/CYP90B1 low borderline
BAampscaffold_80233990 Steroid DWF4/CYP90B1 low borderline
BAampscaffold_90245130 Steroid DWF4/CYP90B1 low borderline
BAampscaffold_90246570 Steroid DWF4/CYP90B1 low borderline
BAampscaffold_90247900 Steroid DWF4/CYP90B1 low borderline
BAampscaffold_90248200 Steroid DWF4/CYP90B1 low borderline
BAampscaffold_130067730 Steroid DWF5 medium pass
BAampscaffold_30136730 Steroid DWF5 medium pass
BAampscaffold_50157820 Steroid DWF5 medium pass
BAampscaffold_50170470 Steroid DWF5 medium pass
BAampscaffold_50168800 Steroid DWF7 medium pass
BAampscaffold_50176660 Steroid FK high pass
BAampscaffold_40147420 Steroid HYD1 high pass
BAampscaffold_70202070 Steroid HYD1 low borderline
BAampscaffold_110041610 Steroid ROT3/CYP90C1 low borderline
BAampscaffold_40141260 Steroid ROT3/CYP90C1 medium borderline
BAampscaffold_70214500 Steroid ROT3/CYP90C1 low borderline
BAampscaffold_80221890 Steroid ROT3/CYP90C1 medium borderline
BAampscaffold_50171800 Steroid SMO1/SMO2 medium pass
BAampscaffold_60197410 Steroid SMO1/SMO2 medium pass
BAampscaffold_100023570 Steroid SMT1/SMT2/SMT3 medium pass
BAampscaffold_100026400 Steroid SMT1/SMT2/SMT3 low borderline
BAampscaffold_10006820 Steroid SMT1/SMT2/SMT3 low borderline
BAampscaffold_110033640 Steroid SMT1/SMT2/SMT3 low borderline
BAampscaffold_120058880 Steroid SMT1/SMT2/SMT3 low borderline
BAampscaffold_170088540 Steroid SMT1/SMT2/SMT3 low borderline
BAampscaffold_20112850 Steroid SMT1/SMT2/SMT3 low borderline
BAampscaffold_20112860 Steroid SMT1/SMT2/SMT3 low borderline
BAampscaffold_40139820 Steroid SMT1/SMT2/SMT3 low borderline
BAampscaffold_40140550 Steroid SMT1/SMT2/SMT3 low borderline
BAampscaffold_40143560 Steroid SMT1/SMT2/SMT3 medium pass
BAampscaffold_40149410 Steroid SMT1/SMT2/SMT3 medium pass
BAampscaffold_50164390 Steroid SMT1/SMT2/SMT3 medium pass
BAampscaffold_50171890 Steroid SMT1/SMT2/SMT3 low borderline
BAampscaffold_60179070 Steroid SMT1/SMT2/SMT3 medium pass
BAampscaffold_60188920 Steroid SMT1/SMT2/SMT3 low borderline
BAampscaffold_60194720 Steroid SMT1/SMT2/SMT3 low borderline
BAampscaffold_70213350 Steroid SMT1/SMT2/SMT3 medium pass
BAampscaffold_70217000 Steroid SMT1/SMT2/SMT3 low borderline
BAampscaffold_80234590 Steroid SMT1/SMT2/SMT3 low borderline
BAampscaffold_80234720 Steroid SMT1/SMT2/SMT3 low borderline