PlantSME Plant secondary metabolism enzyme database

Barbula amplexifolia (barbula_amplexifolia)

Imported from atlas release summary for Barbula amplexifolia.

691
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 180 12 POD (89) View species results
Terpenoid pathway 152 19 BAHD (64) View species results
Alkaloid pathway 132 19 PYKS (28) View species results
Flavonoid pathway 107 11 PAL (27) View species results
Rosmarinic acid pathway 81 7 PAL (27) View species results
Steroid pathway 39 12 CAS (13) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 604 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 113 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Gene Pathway Family Confidence Status
BAampscaffold_30130020 Terpenoid CYP76 medium pass
BAampscaffold_30134640 Terpenoid CYP76 medium borderline
BAampscaffold_30136630 Terpenoid CYP76 medium pass
BAampscaffold_30136790 Terpenoid CYP76 low borderline
BAampscaffold_40140690 Terpenoid CYP76 medium borderline
BAampscaffold_40140700 Terpenoid CYP76 low borderline
BAampscaffold_40140850 Terpenoid CYP76 medium pass
BAampscaffold_40153210 Terpenoid CYP76 medium borderline
BAampscaffold_50155170 Terpenoid CYP76 medium borderline
BAampscaffold_50162150 Terpenoid CYP76 medium pass
BAampscaffold_50165700 Terpenoid CYP76 medium pass
BAampscaffold_50166970 Terpenoid CYP76 medium pass
BAampscaffold_50166980 Terpenoid CYP76 medium pass
BAampscaffold_50171570 Terpenoid CYP76 low borderline
BAampscaffold_50175510 Terpenoid CYP76 low borderline
BAampscaffold_60180940 Terpenoid CYP76 medium borderline
BAampscaffold_60186040 Terpenoid CYP76 medium pass
BAampscaffold_60188730 Terpenoid CYP76 low borderline
BAampscaffold_60198730 Terpenoid CYP76 medium pass
BAampscaffold_70205500 Terpenoid CYP76 medium pass
BAampscaffold_70206260 Terpenoid CYP76 medium pass
BAampscaffold_70206580 Terpenoid CYP76 medium pass
BAampscaffold_70208190 Terpenoid CYP76 medium pass
BAampscaffold_80221640 Terpenoid CYP76 medium pass
BAampscaffold_80221740 Terpenoid CYP76 medium pass
BAampscaffold_80226330 Terpenoid CYP76 medium pass
BAampscaffold_80231190 Terpenoid CYP76 low borderline
BAampscaffold_80231260 Terpenoid CYP76 medium borderline
BAampscaffold_80232150 Terpenoid CYP76 medium borderline
BAampscaffold_80232270 Terpenoid CYP76 medium borderline
BAampscaffold_90245100 Terpenoid CYP76 medium pass
BAampscaffold_90245130 Terpenoid CYP76 medium pass
BAampscaffold_90246570 Terpenoid CYP76 medium borderline
BAampscaffold_90247810 Terpenoid CYP76 medium pass
BAampscaffold_130068090 Terpenoid DXR high pass
BAampscaffold_50167500 Terpenoid DXR high pass
BAampscaffold_110042160 Terpenoid DXS medium pass
BAampscaffold_20114900 Terpenoid DXS medium pass
BAampscaffold_50164900 Terpenoid FPPS low borderline
BAampscaffold_70203570 Terpenoid FPPS medium pass
BAampscaffold_120057010 Terpenoid GGPPS medium borderline
BAampscaffold_120059630 Terpenoid GGPPS medium borderline
BAampscaffold_30122750 Terpenoid GGPPS medium borderline
BAampscaffold_70205250 Terpenoid GGPPS medium borderline
BAampscaffold_130073650 Terpenoid HDR/IspH high pass
BAampscaffold_50157430 Terpenoid HDR/IspH high pass
BAampscaffold_120054010 Terpenoid HDS/IspG medium pass
BAampscaffold_90242520 Terpenoid HDS/IspG high pass
BAampscaffold_110038500 Terpenoid HMGR medium pass
BAampscaffold_90241160 Terpenoid HMGR low borderline