PlantSME Plant secondary metabolism enzyme database

Boechera retrofracta (boechera_retrofracta)

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Imported from atlas release summary for Boechera retrofracta.

1602
Candidate Protein Records
1221
Pathway-Level Records
3211
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 372 19 BAHD (158) View species results
Alkaloid pathway 272 19 SGD (46) View species results
Phenylpropanoid pathway 257 11 POD (121) View species results
Flavonoid pathway 143 8 UFGT (95) View species results
Rosmarinic acid pathway 97 7 C4H (43) View species results
Steroid pathway 80 13 SMT1/SMT2/SMT3 (34) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1239 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 244 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
BOERETT00023365 Alkaloid T3O medium pass
BOERETT00023644 Alkaloid T3O medium borderline
BOERETT00023684 Alkaloid T3O low borderline
BOERETT00023851 Alkaloid T3O medium borderline
BOERETT00023897 Alkaloid T3O medium pass
BOERETT00024357 Alkaloid T3O low borderline
BOERETT00025968 Alkaloid T3O medium borderline
BOERETT00025969 Alkaloid T3O medium borderline
BOERETT00025972 Alkaloid T3O medium borderline
BOERETT00025973 Alkaloid T3O medium borderline
BOERETT00025974 Alkaloid T3O medium borderline
BOERETT00025975 Alkaloid T3O medium borderline
BOERETT00026338 Alkaloid T3O medium pass
BOERETT00026475 Alkaloid T3O medium borderline
BOERETT00026476 Alkaloid T3O medium borderline
BOERETT00026853 Alkaloid T3O medium borderline
BOERETT00027537 Alkaloid T3O medium borderline
BOERETT00028524 Alkaloid T3O medium borderline
BOERETT00028529 Alkaloid T3O medium borderline
BOERETT00028532 Alkaloid T3O medium borderline
BOERETT00028535 Alkaloid T3O medium borderline
BOERETT00028537 Alkaloid T3O medium borderline
BOERETT00028538 Alkaloid T3O medium borderline
BOERETT00028539 Alkaloid T3O medium borderline
BOERETT00028545 Alkaloid T3O medium borderline
BOERETT00028546 Alkaloid T3O medium borderline
BOERETT00028554 Alkaloid T3O medium borderline
BOERETT00028556 Alkaloid T3O medium borderline
BOERETT00028963 Alkaloid T3O medium pass
BOERETT00029123 Alkaloid T3O medium borderline
BOERETT00029203 Alkaloid T3O medium pass
BOERETT00030121 Alkaloid T3O medium borderline
BOERETT00032189 Alkaloid T3O medium borderline
BOERETT00032296 Alkaloid T3O medium borderline
BOERETT00032298 Alkaloid T3O medium borderline
BOERETT00032308 Alkaloid T3O medium borderline
BOERETT00034108 Alkaloid T3O low borderline
BOERETT00034136 Alkaloid T3O medium borderline
BOERETT00034137 Alkaloid T3O medium borderline
BOERETT00034139 Alkaloid T3O medium borderline
BOERETT00034302 Alkaloid T3O medium pass
BOERETT00036233 Alkaloid T3O low borderline
BOERETT00037383 Alkaloid T3O medium pass
BOERETT00037908 Alkaloid T3O medium pass
BOERETT00038491 Alkaloid T3O medium borderline
BOERETT00038496 Alkaloid T3O medium borderline
BOERETT00038498 Alkaloid T3O medium borderline
BOERETT00038510 Alkaloid T3O medium borderline
BOERETT00040296 Alkaloid T3O low borderline
BOERETT00042185 Alkaloid T3O medium pass