PlantSME Plant secondary metabolism enzyme database

Boechera retrofracta (boechera_retrofracta)

/

Imported from atlas release summary for Boechera retrofracta.

1602
Candidate Protein Records
1221
Pathway-Level Records
3211
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 372 19 BAHD (158) View species results
Alkaloid pathway 272 19 SGD (46) View species results
Phenylpropanoid pathway 257 11 POD (121) View species results
Flavonoid pathway 143 8 UFGT (95) View species results
Rosmarinic acid pathway 97 7 C4H (43) View species results
Steroid pathway 80 13 SMT1/SMT2/SMT3 (34) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1239 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 244 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
BOERETT00044468 Alkaloid T3O medium borderline
BOERETT00044495 Alkaloid T3O medium pass
BOERETT00044987 Alkaloid T3O medium borderline
BOERETT00044997 Alkaloid T3O medium pass
BOERETT00045104 Alkaloid T3O medium borderline
BOERETT00045105 Alkaloid T3O medium borderline
BOERETT00045107 Alkaloid T3O medium borderline
BOERETT00045109 Alkaloid T3O medium borderline
BOERETT00045110 Alkaloid T3O medium borderline
BOERETT00045113 Alkaloid T3O medium borderline
BOERETT00045117 Alkaloid T3O medium borderline
BOERETT00047389 Alkaloid T3O medium borderline
BOERETT00047606 Alkaloid T3O medium borderline
BOERETT00049490 Alkaloid T3O medium borderline
BOERETT00049617 Alkaloid T3O medium pass
BOERETT00055804 Alkaloid T3O medium pass
BOERETT00056121 Alkaloid T3O medium borderline
BOERETT00058890 Alkaloid T3O medium borderline
BOERETT00058906 Alkaloid T3O medium borderline
BOERETT00058907 Alkaloid T3O medium borderline
BOERETT00059486 Alkaloid T3O low borderline
BOERETT00060797 Alkaloid T3O medium pass
BOERETT00006247 Alkaloid TDC low borderline
BOERETT00048716 Alkaloid TDC low borderline
BOERETT00008470 Alkaloid TRI/TRII medium pass
BOERETT00009344 Alkaloid TRI/TRII medium pass
BOERETT00013213 Alkaloid TRI/TRII medium pass
BOERETT00013214 Alkaloid TRI/TRII medium pass
BOERETT00013337 Alkaloid TRI/TRII low borderline
BOERETT00016241 Alkaloid TRI/TRII medium pass
BOERETT00020445 Alkaloid TRI/TRII medium pass
BOERETT00021364 Alkaloid TRI/TRII low borderline
BOERETT00023000 Alkaloid TRI/TRII medium pass
BOERETT00023288 Alkaloid TRI/TRII low borderline
BOERETT00023407 Alkaloid TRI/TRII medium pass
BOERETT00023866 Alkaloid TRI/TRII low borderline
BOERETT00025781 Alkaloid TRI/TRII medium pass
BOERETT00025782 Alkaloid TRI/TRII medium pass
BOERETT00025783 Alkaloid TRI/TRII medium pass
BOERETT00028601 Alkaloid TRI/TRII medium pass
BOERETT00028608 Alkaloid TRI/TRII medium pass
BOERETT00029033 Alkaloid TRI/TRII medium pass
BOERETT00032302 Alkaloid TRI/TRII medium borderline
BOERETT00033743 Alkaloid TRI/TRII medium pass
BOERETT00038400 Alkaloid TRI/TRII medium pass
BOERETT00052866 Alkaloid TRI/TRII low borderline
BOERETT00053851 Alkaloid TRI/TRII medium pass
BOERETT00055831 Alkaloid TRI/TRII medium pass
BOERETT00055832 Alkaloid TRI/TRII medium pass
BOERETT00055844 Alkaloid TRI/TRII medium pass