PlantSME Plant secondary metabolism enzyme database

Boechera retrofracta (boechera_retrofracta)

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Imported from atlas release summary for Boechera retrofracta.

1221
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 372 19 BAHD (158) View species results
Alkaloid pathway 272 19 SGD (46) View species results
Phenylpropanoid pathway 257 11 POD (121) View species results
Flavonoid pathway 143 8 UFGT (95) View species results
Rosmarinic acid pathway 97 7 C4H (43) View species results
Steroid pathway 80 13 SMT1/SMT2/SMT3 (34) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1239 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 244 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
BOERETT00023506 Rosmarinic Acid C4H low borderline
BOERETT00023507 Rosmarinic Acid C4H low borderline
BOERETT00023644 Rosmarinic Acid C4H low borderline
BOERETT00023851 Rosmarinic Acid C4H medium pass
BOERETT00023941 Rosmarinic Acid C4H low borderline
BOERETT00025556 Rosmarinic Acid C4H low borderline
BOERETT00025803 Rosmarinic Acid C4H low borderline
BOERETT00025805 Rosmarinic Acid C4H low borderline
BOERETT00025839 Rosmarinic Acid C4H low borderline
BOERETT00025968 Rosmarinic Acid C4H low borderline
BOERETT00025969 Rosmarinic Acid C4H low borderline
BOERETT00025972 Rosmarinic Acid C4H low borderline
BOERETT00025973 Rosmarinic Acid C4H low borderline
BOERETT00025974 Rosmarinic Acid C4H low borderline
BOERETT00025975 Rosmarinic Acid C4H low borderline
BOERETT00025979 Rosmarinic Acid C4H low borderline
BOERETT00025983 Rosmarinic Acid C4H low borderline
BOERETT00026338 Rosmarinic Acid C4H low borderline
BOERETT00026455 Rosmarinic Acid C4H low borderline
BOERETT00026475 Rosmarinic Acid C4H medium pass
BOERETT00026476 Rosmarinic Acid C4H low borderline
BOERETT00026853 Rosmarinic Acid C4H medium pass
BOERETT00026910 Rosmarinic Acid C4H low borderline
BOERETT00027537 Rosmarinic Acid C4H medium pass
BOERETT00028522 Rosmarinic Acid C4H low borderline
BOERETT00028524 Rosmarinic Acid C4H low borderline
BOERETT00028525 Rosmarinic Acid C4H medium pass
BOERETT00028529 Rosmarinic Acid C4H medium pass
BOERETT00028532 Rosmarinic Acid C4H medium pass
BOERETT00028535 Rosmarinic Acid C4H low borderline
BOERETT00028537 Rosmarinic Acid C4H low borderline
BOERETT00028538 Rosmarinic Acid C4H medium pass
BOERETT00028539 Rosmarinic Acid C4H low borderline
BOERETT00028540 Rosmarinic Acid C4H medium pass
BOERETT00028544 Rosmarinic Acid C4H low borderline
BOERETT00028545 Rosmarinic Acid C4H low borderline
BOERETT00028546 Rosmarinic Acid C4H low borderline
BOERETT00028554 Rosmarinic Acid C4H low borderline
BOERETT00028556 Rosmarinic Acid C4H low borderline
BOERETT00028838 Rosmarinic Acid C4H low borderline
BOERETT00028839 Rosmarinic Acid C4H medium pass
BOERETT00028882 Rosmarinic Acid C4H low borderline
BOERETT00028889 Rosmarinic Acid C4H low borderline
BOERETT00029123 Rosmarinic Acid C4H low borderline
BOERETT00029203 Rosmarinic Acid C4H low borderline
BOERETT00030121 Rosmarinic Acid C4H low borderline
BOERETT00030513 Rosmarinic Acid C4H low borderline
BOERETT00030813 Rosmarinic Acid C4H low borderline
BOERETT00030814 Rosmarinic Acid C4H low borderline
BOERETT00031652 Rosmarinic Acid C4H low borderline