PlantSME Plant secondary metabolism enzyme database

Boechera retrofracta (boechera_retrofracta)

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Imported from atlas release summary for Boechera retrofracta.

1221
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 372 19 BAHD (158) View species results
Alkaloid pathway 272 19 SGD (46) View species results
Phenylpropanoid pathway 257 11 POD (121) View species results
Flavonoid pathway 143 8 UFGT (95) View species results
Rosmarinic acid pathway 97 7 C4H (43) View species results
Steroid pathway 80 13 SMT1/SMT2/SMT3 (34) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1239 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 244 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
BOERETT00031660 Rosmarinic Acid C4H low borderline
BOERETT00031663 Rosmarinic Acid C4H low borderline
BOERETT00031676 Rosmarinic Acid C4H low borderline
BOERETT00032189 Rosmarinic Acid C4H low borderline
BOERETT00032296 Rosmarinic Acid C4H medium pass
BOERETT00032298 Rosmarinic Acid C4H low borderline
BOERETT00032308 Rosmarinic Acid C4H medium pass
BOERETT00033591 Rosmarinic Acid C4H low borderline
BOERETT00033868 Rosmarinic Acid C4H low borderline
BOERETT00034136 Rosmarinic Acid C4H low borderline
BOERETT00034137 Rosmarinic Acid C4H low borderline
BOERETT00034138 Rosmarinic Acid C4H medium pass
BOERETT00034139 Rosmarinic Acid C4H low borderline
BOERETT00034140 Rosmarinic Acid C4H low borderline
BOERETT00034302 Rosmarinic Acid C4H low borderline
BOERETT00035466 Rosmarinic Acid C4H medium pass
BOERETT00035471 Rosmarinic Acid C4H low borderline
BOERETT00035972 Rosmarinic Acid C4H low borderline
BOERETT00037649 Rosmarinic Acid C4H low borderline
BOERETT00037722 Rosmarinic Acid C4H low borderline
BOERETT00038491 Rosmarinic Acid C4H medium pass
BOERETT00038496 Rosmarinic Acid C4H low borderline
BOERETT00038498 Rosmarinic Acid C4H medium pass
BOERETT00038504 Rosmarinic Acid C4H medium pass
BOERETT00038510 Rosmarinic Acid C4H medium pass
BOERETT00038832 Rosmarinic Acid C4H low borderline
BOERETT00039124 Rosmarinic Acid C4H low borderline
BOERETT00039529 Rosmarinic Acid C4H low borderline
BOERETT00041287 Rosmarinic Acid C4H low borderline
BOERETT00041304 Rosmarinic Acid C4H low borderline
BOERETT00042185 Rosmarinic Acid C4H low borderline
BOERETT00043282 Rosmarinic Acid C4H low borderline
BOERETT00043596 Rosmarinic Acid C4H low borderline
BOERETT00043927 Rosmarinic Acid C4H medium pass
BOERETT00043928 Rosmarinic Acid C4H medium pass
BOERETT00044045 Rosmarinic Acid C4H low borderline
BOERETT00044411 Rosmarinic Acid C4H medium pass
BOERETT00044413 Rosmarinic Acid C4H low borderline
BOERETT00044468 Rosmarinic Acid C4H low borderline
BOERETT00044987 Rosmarinic Acid C4H medium pass
BOERETT00044997 Rosmarinic Acid C4H low borderline
BOERETT00045104 Rosmarinic Acid C4H low borderline
BOERETT00045105 Rosmarinic Acid C4H medium pass
BOERETT00045107 Rosmarinic Acid C4H low borderline
BOERETT00045108 Rosmarinic Acid C4H low borderline
BOERETT00045109 Rosmarinic Acid C4H medium pass
BOERETT00045110 Rosmarinic Acid C4H medium pass
BOERETT00045113 Rosmarinic Acid C4H low borderline
BOERETT00045114 Rosmarinic Acid C4H low borderline
BOERETT00045117 Rosmarinic Acid C4H low borderline