PlantSME Plant secondary metabolism enzyme database

Boechera retrofracta (boechera_retrofracta)

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Imported from atlas release summary for Boechera retrofracta.

1602
Candidate Protein Records
1221
Pathway-Level Records
3211
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 372 19 BAHD (158) View species results
Alkaloid pathway 272 19 SGD (46) View species results
Phenylpropanoid pathway 257 11 POD (121) View species results
Flavonoid pathway 143 8 UFGT (95) View species results
Rosmarinic acid pathway 97 7 C4H (43) View species results
Steroid pathway 80 13 SMT1/SMT2/SMT3 (34) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1239 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 244 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
BOERETT00055822 Rosmarinic Acid C4H low borderline
BOERETT00056051 Rosmarinic Acid C4H medium pass
BOERETT00056116 Rosmarinic Acid C4H medium pass
BOERETT00056121 Rosmarinic Acid C4H medium pass
BOERETT00056122 Rosmarinic Acid C4H medium pass
BOERETT00056403 Rosmarinic Acid C4H low borderline
BOERETT00056697 Rosmarinic Acid C4H low borderline
BOERETT00057673 Rosmarinic Acid C4H low borderline
BOERETT00058815 Rosmarinic Acid C4H low borderline
BOERETT00058890 Rosmarinic Acid C4H medium pass
BOERETT00058906 Rosmarinic Acid C4H medium pass
BOERETT00058907 Rosmarinic Acid C4H medium pass
BOERETT00058979 Rosmarinic Acid C4H low borderline
BOERETT00059788 Rosmarinic Acid C4H low borderline
BOERETT00005348 Rosmarinic Acid CPR medium pass
BOERETT00033733 Rosmarinic Acid CPR medium pass
BOERETT00036720 Rosmarinic Acid CPR low borderline
BOERETT00045413 Rosmarinic Acid CPR medium pass
BOERETT00046167 Rosmarinic Acid CPR medium pass
BOERETT00059637 Rosmarinic Acid CPR medium pass
BOERETT00003292 Rosmarinic Acid HPPR medium pass
BOERETT00012520 Rosmarinic Acid HPPR medium pass
BOERETT00025963 Rosmarinic Acid HPPR medium pass
BOERETT00042557 Rosmarinic Acid HPPR low borderline
BOERETT00015612 Rosmarinic Acid PAL high pass
BOERETT00023198 Rosmarinic Acid PAL low borderline
BOERETT00026473 Rosmarinic Acid PAL high pass
BOERETT00053920 Rosmarinic Acid PAL high pass
BOERETT00056920 Rosmarinic Acid PAL high pass
BOERETT00005356 Rosmarinic Acid RAS low borderline
BOERETT00006201 Rosmarinic Acid RAS medium pass
BOERETT00010170 Rosmarinic Acid RAS low borderline
BOERETT00020798 Rosmarinic Acid RAS low borderline
BOERETT00023528 Rosmarinic Acid RAS low borderline
BOERETT00026089 Rosmarinic Acid RAS low borderline
BOERETT00027489 Rosmarinic Acid RAS low borderline
BOERETT00027704 Rosmarinic Acid RAS medium pass
BOERETT00030419 Rosmarinic Acid RAS low borderline
BOERETT00034170 Rosmarinic Acid RAS low borderline
BOERETT00035544 Rosmarinic Acid RAS medium pass
BOERETT00035710 Rosmarinic Acid RAS low borderline
BOERETT00037244 Rosmarinic Acid RAS medium pass
BOERETT00039476 Rosmarinic Acid RAS low borderline
BOERETT00044954 Rosmarinic Acid RAS low borderline
BOERETT00045988 Rosmarinic Acid RAS low borderline
BOERETT00047301 Rosmarinic Acid RAS low borderline
BOERETT00048370 Rosmarinic Acid RAS medium pass
BOERETT00055870 Rosmarinic Acid RAS low borderline
BOERETT00058927 Rosmarinic Acid RAS low borderline
BOERETT00003350 Rosmarinic Acid TAT medium pass