PlantSME Plant secondary metabolism enzyme database

Boechera retrofracta (boechera_retrofracta)

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Imported from atlas release summary for Boechera retrofracta.

1602
Candidate Protein Records
1221
Pathway-Level Records
3211
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 372 19 BAHD (158) View species results
Alkaloid pathway 272 19 SGD (46) View species results
Phenylpropanoid pathway 257 11 POD (121) View species results
Flavonoid pathway 143 8 UFGT (95) View species results
Rosmarinic acid pathway 97 7 C4H (43) View species results
Steroid pathway 80 13 SMT1/SMT2/SMT3 (34) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1239 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 244 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Protein/Isoform Record Pathway Family Confidence Status
BOERETT00047606 Steroid DWF4/CYP90B1 low borderline
BOERETT00049490 Steroid DWF4/CYP90B1 low borderline
BOERETT00049617 Steroid DWF4/CYP90B1 medium borderline
BOERETT00054271 Steroid DWF4/CYP90B1 low borderline
BOERETT00054287 Steroid DWF4/CYP90B1 low borderline
BOERETT00056403 Steroid DWF4/CYP90B1 low borderline
BOERETT00060797 Steroid DWF4/CYP90B1 low borderline
BOERETT00032201 Steroid DWF5 medium pass
BOERETT00030319 Steroid DWF7 medium pass
BOERETT00054059 Steroid DWF7 low borderline
BOERETT00059671 Steroid DWF7 medium pass
BOERETT00059672 Steroid DWF7 medium pass
BOERETT00033596 Steroid FK high pass
BOERETT00005351 Steroid HYD1 high pass
BOERETT00000600 Steroid ROT3/CYP90C1 low borderline
BOERETT00002805 Steroid ROT3/CYP90C1 medium borderline
BOERETT00023897 Steroid ROT3/CYP90C1 medium pass
BOERETT00033868 Steroid ROT3/CYP90C1 medium borderline
BOERETT00044997 Steroid ROT3/CYP90C1 medium borderline
BOERETT00045114 Steroid ROT3/CYP90C1 medium borderline
BOERETT00058138 Steroid ROT3/CYP90C1 low borderline
BOERETT00038526 Steroid SMO1/SMO2 medium pass
BOERETT00043943 Steroid SMO1/SMO2 medium pass
BOERETT00055859 Steroid SMO1/SMO2 medium pass
BOERETT00005387 Steroid SMT1/SMT2/SMT3 medium pass
BOERETT00006269 Steroid SMT1/SMT2/SMT3 medium pass
BOERETT00007963 Steroid SMT1/SMT2/SMT3 low borderline
BOERETT00009811 Steroid SMT1/SMT2/SMT3 medium pass
BOERETT00009852 Steroid SMT1/SMT2/SMT3 low borderline
BOERETT00010201 Steroid SMT1/SMT2/SMT3 medium pass
BOERETT00011882 Steroid SMT1/SMT2/SMT3 low borderline
BOERETT00012736 Steroid SMT1/SMT2/SMT3 medium pass
BOERETT00015382 Steroid SMT1/SMT2/SMT3 medium pass
BOERETT00015625 Steroid SMT1/SMT2/SMT3 low borderline
BOERETT00015626 Steroid SMT1/SMT2/SMT3 low borderline
BOERETT00015637 Steroid SMT1/SMT2/SMT3 medium pass
BOERETT00016097 Steroid SMT1/SMT2/SMT3 low borderline
BOERETT00017110 Steroid SMT1/SMT2/SMT3 low borderline
BOERETT00020512 Steroid SMT1/SMT2/SMT3 medium pass
BOERETT00020515 Steroid SMT1/SMT2/SMT3 low borderline
BOERETT00020563 Steroid SMT1/SMT2/SMT3 medium pass
BOERETT00021532 Steroid SMT1/SMT2/SMT3 medium pass
BOERETT00021535 Steroid SMT1/SMT2/SMT3 medium pass
BOERETT00021539 Steroid SMT1/SMT2/SMT3 medium pass
BOERETT00021543 Steroid SMT1/SMT2/SMT3 medium pass
BOERETT00021544 Steroid SMT1/SMT2/SMT3 medium pass
BOERETT00021547 Steroid SMT1/SMT2/SMT3 medium pass
BOERETT00023580 Steroid SMT1/SMT2/SMT3 medium pass
BOERETT00023688 Steroid SMT1/SMT2/SMT3 low borderline
BOERETT00023808 Steroid SMT1/SMT2/SMT3 medium pass