Chiococca alba (chiococca_alba)
Imported from atlas release summary for Chiococca alba.
2531
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2531
Candidate Genes
C4H
6.47%
BAHD
6.34%
C3'H/CYP98A
5.91%
UGT
4.38%
IFS
4.08%
7DLGT
3.81%
UFGT
3.68%
CYP76
3.33%
Other Families
62.0%
More Families (96)
4CL
204
3.16%
POD
194
3.0%
T3O
193
2.99%
F3H
174
2.69%
STR
152
2.35%
NMT
152
2.35%
DWF4/CYP90B1
151
2.34%
BR6OX2/CYP85A2
134
2.07%
F3'H/CYP75B
133
2.06%
H6H
105
1.62%
CAD
101
1.56%
CYP71
97
1.5%
TRI/TRII
90
1.39%
CODM/T6ODM
90
1.39%
7DLH
89
1.38%
SMT1/SMT2/SMT3
88
1.36%
TPS
72
1.11%
IFR
71
1.1%
GES
70
1.08%
CAS
69
1.07%
SGD
64
0.99%
GS
61
0.94%
CYP90D1
61
0.94%
HCT
58
0.9%
LAC
54
0.84%
TAT
53
0.82%
SLS
52
0.8%
IO
50
0.77%
FNS
50
0.77%
CSE
49
0.76%
T16H
48
0.74%
PYKS
46
0.71%
G8O/G8H
45
0.7%
BBE
43
0.67%
RAS
40
0.62%
CPD/CYP90A1
40
0.62%
PMT
36
0.56%
CYP51G1
34
0.53%
F5H/CYP84A
33
0.51%
BR6OX1/CYP85A1
32
0.5%
NCS
30
0.46%
ANR
29
0.45%
PAL
27
0.42%
COMT
27
0.42%
F3'5'H/CYP75A
26
0.4%
CNMT
24
0.37%
CCR
23
0.36%
LAMT
21
0.32%
8HGO
20
0.31%
ANS/LDOX
19
0.29%
CHS
19
0.29%
FPPS
18
0.28%
GGPPS
18
0.28%
ROT3/CYP90C1
17
0.26%
16OMT
16
0.25%
CYP80B1
16
0.25%
COR
16
0.25%
MPO
15
0.23%
ISY
14
0.22%
CYP719
14
0.22%
DET2
14
0.22%
SMO1/SMO2
14
0.22%
DXS
14
0.22%
HMGR
14
0.22%
CHI
13
0.2%
DFR
13
0.2%
HPPR
11
0.17%
CMK/IspE
11
0.17%
SQS/FDFT1
10
0.15%
CPR
9
0.14%
AACT
9
0.14%
6OMT_4OMT_SOMT
8
0.12%
SQE
7
0.11%
MVK
7
0.11%
TYDC_DDC
6
0.09%
TDC
6
0.09%
FLS
6
0.09%
CCoAOMT
6
0.09%
DWF1
6
0.09%
MVD
5
0.08%
DWF7
4
0.06%
HDR/IspH
3
0.05%
HMGS
3
0.05%
ADC
2
0.03%
CYP80F1
2
0.03%
FK
2
0.03%
DWF5
2
0.03%
HYD1
2
0.03%
CPI1
2
0.03%
MCT/IspD
2
0.03%
IDI
2
0.03%
ODC
1
0.02%
HDS/IspG
1
0.02%
DXR
1
0.02%
MDS/IspF
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 804 | 19 | BAHD (329) | View species results |
| Alkaloid pathway | 614 | 25 | 7DLGT (110) | View species results |
| Phenylpropanoid pathway | 415 | 12 | POD (166) | View species results |
| Flavonoid pathway | 325 | 11 | UFGT (209) | View species results |
| Rosmarinic acid pathway | 208 | 7 | C4H (90) | View species results |
| Steroid pathway | 165 | 16 | CAS (60) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2546 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 508 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Calb1560022500.1 | Flavonoid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| Calb1860033050.1 | Flavonoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Calb1860033050.2 | Flavonoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Calb1910061060.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Calb1910061070.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Calb1910067330.1 | Flavonoid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| Calb1910070110.1 | Flavonoid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| Calb1910070110.2 | Flavonoid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| Calb1930078330.1 | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Calb1930078340.1 | Flavonoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Calb1940081570.1 | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Calb1940081580.1 | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Calb2280095750.1 | Flavonoid | 4CL | medium | pass | 4CL__00002__sp_I3PB37_4CL1_PETHY |
| Calb2300101150.1 | Flavonoid | 4CL | low | borderline | 4CL__00003__sp_M4ISH0_CCL1_HUMLU |
| Calb2340108840.1 | Flavonoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| Calb2380117900.1 | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Calb2420125260.1 | Flavonoid | 4CL | medium | pass | 4CL__00003__sp_M4ISH0_CCL1_HUMLU |
| Calb2430127620.1 | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Calb2430127620.2 | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Calb2530135310.1 | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Calb2530135330.1 | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Calb2530135340.1 | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Calb2530135340.2 | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Calb2590141680.1 | Flavonoid | 4CL | low | borderline | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Calb2590141680.2 | Flavonoid | 4CL | low | borderline | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Calb2600142920.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Calb2600143420.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Calb2600143430.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Calb2650150540.1 | Flavonoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Calb2650156190.1 | Flavonoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Calb2650158150.1 | Flavonoid | 4CL | low | borderline | 4CL__00017__sp_Q9S725_4CL2_ARATH |
| Calb2650158150.2 | Flavonoid | 4CL | low | borderline | 4CL__00007__sp_Q42524_4CL1_ARATH |
| Calb2650158150.3 | Flavonoid | 4CL | low | borderline | 4CL__00017__sp_Q9S725_4CL2_ARATH |
| Calb2660160080.1 | Flavonoid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Calb2720166820.1 | Flavonoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| Calb2790170390.1 | Flavonoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Calb3100178620.1 | Flavonoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Calb3210185070.1 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Calb3210185070.2 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Calb3220186250.1 | Flavonoid | 4CL | low | borderline | 4CL__00003__sp_M4ISH0_CCL1_HUMLU |
| Calb3220186250.2 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Calb3390203520.1 | Flavonoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| Calb3390203520.2 | Flavonoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| Calb3390203520.3 | Flavonoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| Calb3390203520.4 | Flavonoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| Calb3390203520.5 | Flavonoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| Calb3520217010.1 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Calb3520217010.2 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Calb3520217010.3 | Flavonoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Calb3540219120.1 | Flavonoid | 4CL | medium | pass | 4CL__00002__sp_I3PB37_4CL1_PETHY |