PlantSME Plant secondary metabolism enzyme database

Citrus grandis (citrus_grandis)

Imported from atlas release summary for Citrus grandis.

2318
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.64% Alkaloid pathway 25.45% Phenylpropanoid pathway 16.74% Flavonoid pathway 11.3% Rosmarinic acid pathway 9.58% Steroid pathway 7.29%
Family Distribution
BAHD 6.09% C3'H/CYP98A 5.86% C4H 5.74% 4CL 5.01% IFS 3.94% CYP76 3.78% UGT 3.36% NMT 3.25%
Other Families 62.98%
More Families (97)
T3O 182 3.23% POD 178 3.16% 7DLGT 169 3.0% UFGT 166 2.95% F3H 153 2.72% DWF4/CYP90B1 133 2.36% CAS 132 2.34% TPS 115 2.04% GES 108 1.92% CAD 107 1.9% CODM/T6ODM 103 1.83% BR6OX2/CYP85A2 98 1.74% F3'H/CYP75B 95 1.69% CYP71 82 1.46% BBE 78 1.38% SMT1/SMT2/SMT3 66 1.17% TRI/TRII 63 1.12% H6H 61 1.08% HCT 61 1.08% IFR 58 1.03% CYP90D1 57 1.01% STR 56 0.99% RAS 54 0.96% T16H 49 0.87% GS 49 0.87% TAT 48 0.85% G8O/G8H 44 0.78% ANR 43 0.76% PYKS 40 0.71% 7DLH 39 0.69% IO 38 0.67% SGD 36 0.64% LAMT 31 0.55% CCR 31 0.55% COMT 29 0.51% GGPPS 29 0.51% ISY 28 0.5% F3'5'H/CYP75A 28 0.5% CNMT 27 0.48% PMT 27 0.48% LAC 27 0.48% CPD/CYP90A1 27 0.48% FNS 24 0.43% COR 23 0.41% CPR 23 0.41% AACT 22 0.39% DFR 20 0.36% NCS 19 0.34% CHS 19 0.34% CSE 19 0.34% SLS 18 0.32% 8HGO 18 0.32% PAL 18 0.32% CYP51G1 18 0.32% FPPS 16 0.28% CHI 15 0.27% F5H/CYP84A 14 0.25% SQE 14 0.25% TYDC_DDC 11 0.2% MPO 11 0.2% CCoAOMT 11 0.2% BR6OX1/CYP85A1 11 0.2% ROT3/CYP90C1 11 0.2% CYP80B1 10 0.18% HPPR 10 0.18% DXS 10 0.18% ANS/LDOX 9 0.16% SQS/FDFT1 9 0.16% DXR 9 0.16% CYP719 8 0.14% 6OMT_4OMT_SOMT 7 0.12% HMGS 7 0.12% HYD1 6 0.11% TDC 4 0.07% ADC 4 0.07% XMT_MXMT_DXMT 4 0.07% FK 4 0.07% MVD 4 0.07% MVK 4 0.07% MCT/IspD 4 0.07% PMK 4 0.07% HMGR 4 0.07% ODC 3 0.05% MDS/IspF 3 0.05% HDR/IspH 3 0.05% FLS 2 0.04% CPI1 2 0.04% SMO1/SMO2 2 0.04% DWF7 2 0.04% DET2 2 0.04% 16OMT 1 0.02% DWF5 1 0.02% DWF1 1 0.02% CMK/IspE 1 0.02% IDI 1 0.02% GPPS 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 687 19 BAHD (281) View species results
Alkaloid pathway 590 26 GES (105) View species results
Phenylpropanoid pathway 388 11 POD (171) View species results
Flavonoid pathway 262 8 UFGT (152) View species results
Rosmarinic acid pathway 222 7 C4H (80) View species results
Steroid pathway 169 13 CAS (107) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2050 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 458 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 6OMT_4OMT_SOMT
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Gene Pathway Family Confidence Status Best Target
CIgra02G0008240.1 Alkaloid 6OMT_4OMT_SOMT medium pass 6OMT_4OMT_SOMT__00005__sp_Q7XB10_4OMT2_PAPSO
CIgra02G0027240.1 Alkaloid 6OMT_4OMT_SOMT medium borderline 6OMT_4OMT_SOMT__00003__sp_Q5C9L7_6OMT_THLFG
CIgra06G0016180.1 Alkaloid 6OMT_4OMT_SOMT medium pass 6OMT_4OMT_SOMT__00003__sp_Q5C9L7_6OMT_THLFG
CIgra08G0001110.1 Alkaloid 6OMT_4OMT_SOMT medium borderline 6OMT_4OMT_SOMT__00004__sp_Q6WUC1_6OMT_PAPSO
CIgra09G0009980.1 Alkaloid 6OMT_4OMT_SOMT medium pass 6OMT_4OMT_SOMT__00001__sp_D3KY98_OMT1_CARIP
CIgra09G0009990.1 Alkaloid 6OMT_4OMT_SOMT low borderline 6OMT_4OMT_SOMT__00001__sp_D3KY98_OMT1_CARIP
CIgra09G0010000.1 Alkaloid 6OMT_4OMT_SOMT medium borderline 6OMT_4OMT_SOMT__00003__sp_Q5C9L7_6OMT_THLFG