Citrus grandis (citrus_grandis)
Imported from atlas release summary for Citrus grandis.
2318
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2318
Candidate Genes
BAHD
6.09%
C3'H/CYP98A
5.86%
C4H
5.74%
4CL
5.01%
IFS
3.94%
CYP76
3.78%
UGT
3.36%
NMT
3.25%
Other Families
62.98%
More Families (97)
T3O
182
3.23%
POD
178
3.16%
7DLGT
169
3.0%
UFGT
166
2.95%
F3H
153
2.72%
DWF4/CYP90B1
133
2.36%
CAS
132
2.34%
TPS
115
2.04%
GES
108
1.92%
CAD
107
1.9%
CODM/T6ODM
103
1.83%
BR6OX2/CYP85A2
98
1.74%
F3'H/CYP75B
95
1.69%
CYP71
82
1.46%
BBE
78
1.38%
SMT1/SMT2/SMT3
66
1.17%
TRI/TRII
63
1.12%
H6H
61
1.08%
HCT
61
1.08%
IFR
58
1.03%
CYP90D1
57
1.01%
STR
56
0.99%
RAS
54
0.96%
T16H
49
0.87%
GS
49
0.87%
TAT
48
0.85%
G8O/G8H
44
0.78%
ANR
43
0.76%
PYKS
40
0.71%
7DLH
39
0.69%
IO
38
0.67%
SGD
36
0.64%
LAMT
31
0.55%
CCR
31
0.55%
COMT
29
0.51%
GGPPS
29
0.51%
ISY
28
0.5%
F3'5'H/CYP75A
28
0.5%
CNMT
27
0.48%
PMT
27
0.48%
LAC
27
0.48%
CPD/CYP90A1
27
0.48%
FNS
24
0.43%
COR
23
0.41%
CPR
23
0.41%
AACT
22
0.39%
DFR
20
0.36%
NCS
19
0.34%
CHS
19
0.34%
CSE
19
0.34%
SLS
18
0.32%
8HGO
18
0.32%
PAL
18
0.32%
CYP51G1
18
0.32%
FPPS
16
0.28%
CHI
15
0.27%
F5H/CYP84A
14
0.25%
SQE
14
0.25%
TYDC_DDC
11
0.2%
MPO
11
0.2%
CCoAOMT
11
0.2%
BR6OX1/CYP85A1
11
0.2%
ROT3/CYP90C1
11
0.2%
CYP80B1
10
0.18%
HPPR
10
0.18%
DXS
10
0.18%
ANS/LDOX
9
0.16%
SQS/FDFT1
9
0.16%
DXR
9
0.16%
CYP719
8
0.14%
6OMT_4OMT_SOMT
7
0.12%
HMGS
7
0.12%
HYD1
6
0.11%
TDC
4
0.07%
ADC
4
0.07%
XMT_MXMT_DXMT
4
0.07%
FK
4
0.07%
MVD
4
0.07%
MVK
4
0.07%
MCT/IspD
4
0.07%
PMK
4
0.07%
HMGR
4
0.07%
ODC
3
0.05%
MDS/IspF
3
0.05%
HDR/IspH
3
0.05%
FLS
2
0.04%
CPI1
2
0.04%
SMO1/SMO2
2
0.04%
DWF7
2
0.04%
DET2
2
0.04%
16OMT
1
0.02%
DWF5
1
0.02%
DWF1
1
0.02%
CMK/IspE
1
0.02%
IDI
1
0.02%
GPPS
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 687 | 19 | BAHD (281) | View species results |
| Alkaloid pathway | 590 | 26 | GES (105) | View species results |
| Phenylpropanoid pathway | 388 | 11 | POD (171) | View species results |
| Flavonoid pathway | 262 | 8 | UFGT (152) | View species results |
| Rosmarinic acid pathway | 222 | 7 | C4H (80) | View species results |
| Steroid pathway | 169 | 13 | CAS (107) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 2050 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 458 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| CIgra01G0000810.1 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| CIgra01G0007460.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra01G0008470.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra01G0008480.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra01G0023120.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra02G0003880.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra02G0003880.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra02G0003890.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra02G0003890.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra02G0008580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra02G0008590.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra02G0021300.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra02G0034020.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra02G0034020.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra02G0035140.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CIgra02G0035180.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CIgra03G0019410.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra04G0010800.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra04G0012010.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra04G0014110.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra04G0017600.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CIgra04G0017630.1 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| CIgra05G0008240.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra05G0018540.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra05G0021160.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra05G0021160.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra05G0027730.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CIgra06G0003380.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra06G0003470.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra06G0003480.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra06G0003490.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra06G0013740.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra06G0016050.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra06G0016060.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra06G0016070.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra06G0020410.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra07G0004250.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra07G0005630.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra07G0006900.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra07G0015090.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra07G0015310.1 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| CIgra07G0015320.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CIgra08G0012180.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CIgra08G0019840.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra09G0016330.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CIgra09G0016340.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CIgra09G0016350.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CIgra09G0016390.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| CIgra09G0020330.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| CIgra09G0020330.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |