PlantSME Plant secondary metabolism enzyme database

Citrus sinensis (citrus_sinensis)

Imported from atlas release summary for Citrus sinensis.

2983
Candidate Protein Records
2333
Pathway-Level Records
5625
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 705 19 BAHD (287) View species results
Alkaloid pathway 549 25 NMT (96) View species results
Phenylpropanoid pathway 468 13 POD (203) View species results
Flavonoid pathway 232 15 UFGT (132) View species results
Rosmarinic acid pathway 191 7 C4H (66) View species results
Steroid pathway 188 14 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1881 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 409 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Csinscaffold005100200460.1 Rosmarinic Acid C4H medium pass
Csinscaffold005380202000.1 Rosmarinic Acid C4H low borderline
Csinscaffold005470202500.1 Rosmarinic Acid C4H low borderline
Csinscaffold005470202520.1 Rosmarinic Acid C4H low borderline
Csinscaffold005490202540.1 Rosmarinic Acid C4H medium pass
Csinscaffold005850204280.1 Rosmarinic Acid C4H low borderline
Csinscaffold005850204290.1 Rosmarinic Acid C4H low borderline
Csinscaffold005850204300.1 Rosmarinic Acid C4H low borderline
Csinscaffold005850204310.1 Rosmarinic Acid C4H medium pass
Csinscaffold005940204810.1 Rosmarinic Acid C4H low borderline
Csinscaffold005940204830.1 Rosmarinic Acid C4H low borderline
Csinscaffold006130205760.1 Rosmarinic Acid C4H low borderline
Csinscaffold006300206500.1 Rosmarinic Acid C4H low borderline
Csinscaffold006300206500.2 Rosmarinic Acid C4H low borderline
Csinscaffold006300206500.3 Rosmarinic Acid C4H low borderline
Csinscaffold006300206500.5 Rosmarinic Acid C4H low borderline
Csinscaffold006370206770.1 Rosmarinic Acid C4H low borderline
Csinscaffold006370206800.1 Rosmarinic Acid C4H low borderline
Csinscaffold006370206810.1 Rosmarinic Acid C4H low borderline
Csinscaffold006470207250.1 Rosmarinic Acid C4H low borderline
Csinscaffold006980209000.1 Rosmarinic Acid C4H low borderline
Csinscaffold007170209550.1 Rosmarinic Acid C4H low borderline
Csinscaffold007820211530.1 Rosmarinic Acid C4H low borderline
Csinscaffold008510213040.1 Rosmarinic Acid C4H low borderline
Csinscaffold009070214230.1 Rosmarinic Acid C4H low borderline
Csinscaffold009070214250.1 Rosmarinic Acid C4H low borderline
Csinscaffold009070214260.1 Rosmarinic Acid C4H low borderline
Csinscaffold009450214860.1 Rosmarinic Acid C4H low borderline
Csinscaffold009750215410.1 Rosmarinic Acid C4H low borderline
Csinscaffold010670217200.1 Rosmarinic Acid C4H low borderline
Csinscaffold010870217490.1 Rosmarinic Acid C4H medium pass
Csinscaffold010870217500.1 Rosmarinic Acid C4H low borderline
Csinscaffold010870217510.1 Rosmarinic Acid C4H low borderline
Csinscaffold010870217520.1 Rosmarinic Acid C4H medium pass
Csinscaffold011900218950.1 Rosmarinic Acid C4H low borderline
Csinscaffold012430219440.1 Rosmarinic Acid C4H medium pass
Csinscaffold013570220670.1 Rosmarinic Acid C4H low borderline
Csinscaffold013690220800.1 Rosmarinic Acid C4H low borderline
Csinscaffold013910221070.1 Rosmarinic Acid C4H low borderline
Csinscaffold013910221080.1 Rosmarinic Acid C4H low borderline
Csinscaffold014300221490.1 Rosmarinic Acid C4H low borderline
Csinscaffold014590221720.1 Rosmarinic Acid C4H low borderline
Csinscaffold014590221730.1 Rosmarinic Acid C4H low borderline
Csinscaffold015070222170.1 Rosmarinic Acid C4H low borderline
Csinscaffold015340222370.1 Rosmarinic Acid C4H medium pass
Csinscaffold016700223400.1 Rosmarinic Acid C4H low borderline
Csinscaffold018030224230.1 Rosmarinic Acid C4H medium pass
Csinscaffold019480225360.1 Rosmarinic Acid C4H medium pass
Csinscaffold019960225780.1 Rosmarinic Acid C4H low borderline
Csinscaffold021220226530.1 Rosmarinic Acid C4H low borderline