Dianthus caryophyllus (dianthus_caryophyllus)
Imported from atlas release summary for Dianthus caryophyllus.
2090
Candidate Protein Records
1667
Pathway-Level Records
4142
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4142
Family-Level Calls
BAHD
5.94%
C3'H/CYP98A
5.65%
C4H
5.38%
POD
5.26%
UGT
3.96%
UFGT
3.69%
4CL
3.69%
CYP76
3.6%
Other Families
62.82%
More Families (96)
7DLGT
147
3.55%
F3H
146
3.52%
IFS
133
3.21%
T3O
118
2.85%
NMT
102
2.46%
DWF4/CYP90B1
95
2.29%
CODM/T6ODM
91
2.2%
F3'H/CYP75B
85
2.05%
BR6OX2/CYP85A2
77
1.86%
STR
70
1.69%
H6H
66
1.59%
CAD
65
1.57%
SMT1/SMT2/SMT3
64
1.55%
TRI/TRII
56
1.35%
CAS
51
1.23%
CYP71
46
1.11%
TPS
45
1.09%
COMT
44
1.06%
RAS
44
1.06%
SGD
42
1.01%
HCT
39
0.94%
CSE
38
0.92%
T16H
37
0.89%
GES
36
0.87%
IFR
36
0.87%
LAC
34
0.82%
ANR
33
0.8%
CYP90D1
33
0.8%
GS
32
0.77%
SLS
31
0.75%
PMT
29
0.7%
16OMT
28
0.68%
G8O/G8H
28
0.68%
PYKS
28
0.68%
7DLH
27
0.65%
8HGO
25
0.6%
CCR
23
0.56%
CYP51G1
23
0.56%
ROT3/CYP90C1
23
0.56%
F3'5'H/CYP75A
22
0.53%
FNS
21
0.51%
COR
19
0.46%
PAL
18
0.43%
BBE
17
0.41%
IO
16
0.39%
LAMT
16
0.39%
TAT
15
0.36%
ANS/LDOX
14
0.34%
F5H/CYP84A
14
0.34%
BR6OX1/CYP85A1
14
0.34%
CPD/CYP90A1
14
0.34%
NCS
13
0.31%
SQS/FDFT1
13
0.31%
DFR
12
0.29%
FPPS
11
0.27%
HPPR
10
0.24%
DXR
10
0.24%
CHS
9
0.22%
DET2
9
0.22%
CPR
8
0.19%
SMO1/SMO2
8
0.19%
GGPPS
8
0.19%
CYP80B1
7
0.17%
MPO
7
0.17%
TYDC_DDC
7
0.17%
DWF7
7
0.17%
AACT
7
0.17%
DWF1
6
0.14%
SQE
6
0.14%
DXS
6
0.14%
CNMT
5
0.12%
CCoAOMT
5
0.12%
CYP719
4
0.1%
ISY
4
0.1%
CHI
4
0.1%
HYD1
4
0.1%
HMGR
4
0.1%
HMGS
4
0.1%
ADC
3
0.07%
MCT/IspD
3
0.07%
MVK
3
0.07%
MVD
3
0.07%
XMT_MXMT_DXMT
2
0.05%
TDC
2
0.05%
FLS
2
0.05%
CMK/IspE
2
0.05%
GPPS
2
0.05%
IDI
2
0.05%
PMK
2
0.05%
HDS/IspG
2
0.05%
6OMT_4OMT_SOMT
1
0.02%
DWF5
1
0.02%
FK
1
0.02%
CPI1
1
0.02%
MDS/IspF
1
0.02%
HDR/IspH
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 483 | 20 | BAHD (183) | View species results |
| Phenylpropanoid pathway | 402 | 12 | POD (198) | View species results |
| Alkaloid pathway | 339 | 20 | 7DLGT (65) | View species results |
| Flavonoid pathway | 215 | 12 | UFGT (138) | View species results |
| Rosmarinic acid pathway | 134 | 7 | C4H (46) | View species results |
| Steroid pathway | 94 | 11 | SMT1/SMT2/SMT3 (33) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1453 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 329 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| genome_Dca53714.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| genome_Dca53852.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| genome_Dca54039.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| genome_Dca5432.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| genome_Dca54620.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| genome_Dca55022.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| genome_Dca56553.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| genome_Dca56852.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| genome_Dca57279.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| genome_Dca57890.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| genome_Dca59778.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| genome_Dca60027.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| genome_Dca60085.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| genome_Dca6020.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| genome_Dca6051.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| genome_Dca60901.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| genome_Dca61092.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| genome_Dca61202.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| genome_Dca6121.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| genome_Dca9203.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |