PlantSME Plant secondary metabolism enzyme database

Dianthus caryophyllus (dianthus_caryophyllus)

Imported from atlas release summary for Dianthus caryophyllus.

1667
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 483 20 BAHD (183) View species results
Phenylpropanoid pathway 402 12 POD (198) View species results
Alkaloid pathway 339 20 7DLGT (65) View species results
Flavonoid pathway 215 12 UFGT (138) View species results
Rosmarinic acid pathway 134 7 C4H (46) View species results
Steroid pathway 94 11 SMT1/SMT2/SMT3 (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 329 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
genome_Dca56445.1 Alkaloid 7DLGT low borderline
genome_Dca56698.1 Alkaloid 7DLGT low borderline
genome_Dca5728.1 Alkaloid 7DLGT low borderline
genome_Dca5731.1 Alkaloid 7DLGT low borderline
genome_Dca57346.1 Alkaloid 7DLGT low borderline
genome_Dca57349.1 Alkaloid 7DLGT low borderline
genome_Dca57375.1 Alkaloid 7DLGT low borderline
genome_Dca57379.1 Alkaloid 7DLGT high pass
genome_Dca59180.1 Alkaloid 7DLGT low borderline
genome_Dca60360.1 Alkaloid 7DLGT low borderline
genome_Dca605.1 Alkaloid 7DLGT high pass
genome_Dca60514.1 Alkaloid 7DLGT low borderline
genome_Dca62090.1 Alkaloid 7DLGT low borderline
genome_Dca62091.1 Alkaloid 7DLGT low borderline
genome_Dca62092.1 Alkaloid 7DLGT low borderline
genome_Dca62093.1 Alkaloid 7DLGT low borderline
genome_Dca62094.1 Alkaloid 7DLGT low borderline
genome_Dca62095.1 Alkaloid 7DLGT low borderline
genome_Dca6411.1 Alkaloid 7DLGT low borderline
genome_Dca6616.1 Alkaloid 7DLGT low borderline
genome_Dca7368.1 Alkaloid 7DLGT low borderline
genome_Dca738.1 Alkaloid 7DLGT medium pass
genome_Dca739.1 Alkaloid 7DLGT low borderline
genome_Dca8341.1 Alkaloid 7DLGT low borderline
genome_Dca8345.1 Alkaloid 7DLGT low borderline
genome_Dca9350.1 Alkaloid 7DLGT low borderline
genome_Dca11955.1 Alkaloid 7DLH medium borderline
genome_Dca1479.1 Alkaloid 7DLH medium borderline
genome_Dca1481.1 Alkaloid 7DLH medium borderline
genome_Dca16790.1 Alkaloid 7DLH low borderline
genome_Dca19350.1 Alkaloid 7DLH medium borderline
genome_Dca23918.1 Alkaloid 7DLH medium borderline
genome_Dca23921.1 Alkaloid 7DLH medium borderline
genome_Dca29201.1 Alkaloid 7DLH medium borderline
genome_Dca29382.1 Alkaloid 7DLH medium borderline
genome_Dca31771.1 Alkaloid 7DLH medium borderline
genome_Dca34291.1 Alkaloid 7DLH medium borderline
genome_Dca34292.1 Alkaloid 7DLH medium borderline
genome_Dca34816.1 Alkaloid 7DLH medium borderline
genome_Dca34824.1 Alkaloid 7DLH medium borderline
genome_Dca34926.1 Alkaloid 7DLH medium borderline
genome_Dca35372.1 Alkaloid 7DLH medium pass
genome_Dca37546.1 Alkaloid 7DLH low borderline
genome_Dca41143.1 Alkaloid 7DLH medium borderline
genome_Dca41970.1 Alkaloid 7DLH medium borderline
genome_Dca432.1 Alkaloid 7DLH medium borderline
genome_Dca53512.1 Alkaloid 7DLH medium pass
genome_Dca54668.1 Alkaloid 7DLH medium borderline
genome_Dca61589.1 Alkaloid 7DLH medium borderline
genome_Dca62.1 Alkaloid 7DLH low borderline