PlantSME Plant secondary metabolism enzyme database

Dianthus caryophyllus (dianthus_caryophyllus)

Imported from atlas release summary for Dianthus caryophyllus.

1667
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 483 20 BAHD (183) View species results
Phenylpropanoid pathway 402 12 POD (198) View species results
Alkaloid pathway 339 20 7DLGT (65) View species results
Flavonoid pathway 215 12 UFGT (138) View species results
Rosmarinic acid pathway 134 7 C4H (46) View species results
Steroid pathway 94 11 SMT1/SMT2/SMT3 (33) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1453 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 329 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
genome_Dca33448.1 Alkaloid 7DLGT medium pass
genome_Dca35647.1 Alkaloid 7DLGT high pass
genome_Dca35975.1 Alkaloid 7DLGT medium pass
genome_Dca35976.1 Alkaloid 7DLGT low borderline
genome_Dca36907.1 Alkaloid 7DLGT low borderline
genome_Dca37117.1 Alkaloid 7DLGT low borderline
genome_Dca38937.1 Alkaloid 7DLGT high pass
genome_Dca39933.1 Alkaloid 7DLGT low borderline
genome_Dca40902.1 Alkaloid 7DLGT low borderline
genome_Dca41029.1 Alkaloid 7DLGT medium pass
genome_Dca41469.1 Alkaloid 7DLGT low borderline
genome_Dca41795.1 Alkaloid 7DLGT medium pass
genome_Dca42197.1 Alkaloid 7DLGT low borderline
genome_Dca43399.1 Alkaloid 7DLGT low borderline
genome_Dca43923.1 Alkaloid 7DLGT high pass
genome_Dca44180.1 Alkaloid 7DLGT low borderline
genome_Dca44180.2 Alkaloid 7DLGT low borderline
genome_Dca44368.1 Alkaloid 7DLGT low borderline
genome_Dca444.1 Alkaloid 7DLGT low borderline
genome_Dca446.1 Alkaloid 7DLGT medium pass
genome_Dca447.1 Alkaloid 7DLGT low borderline
genome_Dca44761.1 Alkaloid 7DLGT low borderline
genome_Dca44762.1 Alkaloid 7DLGT low borderline
genome_Dca44949.1 Alkaloid 7DLGT low borderline
genome_Dca45681.1 Alkaloid 7DLGT low borderline
genome_Dca46093.1 Alkaloid 7DLGT low borderline
genome_Dca46302.1 Alkaloid 7DLGT medium pass
genome_Dca46303.1 Alkaloid 7DLGT high pass
genome_Dca46947.1 Alkaloid 7DLGT medium pass
genome_Dca47272.1 Alkaloid 7DLGT high pass
genome_Dca47506.1 Alkaloid 7DLGT high pass
genome_Dca47507.1 Alkaloid 7DLGT high pass
genome_Dca47835.1 Alkaloid 7DLGT low borderline
genome_Dca48452.1 Alkaloid 7DLGT low borderline
genome_Dca48590.1 Alkaloid 7DLGT low borderline
genome_Dca49410.1 Alkaloid 7DLGT low borderline
genome_Dca49518.1 Alkaloid 7DLGT low borderline
genome_Dca49520.1 Alkaloid 7DLGT medium pass
genome_Dca50415.1 Alkaloid 7DLGT low borderline
genome_Dca51515.1 Alkaloid 7DLGT low borderline
genome_Dca5239.1 Alkaloid 7DLGT low borderline
genome_Dca5241.1 Alkaloid 7DLGT low borderline
genome_Dca5242.1 Alkaloid 7DLGT low borderline
genome_Dca52885.1 Alkaloid 7DLGT low borderline
genome_Dca53304.1 Alkaloid 7DLGT medium pass
genome_Dca53305.1 Alkaloid 7DLGT medium pass
genome_Dca53491.1 Alkaloid 7DLGT high pass
genome_Dca5362.1 Alkaloid 7DLGT medium pass
genome_Dca54998.1 Alkaloid 7DLGT low borderline
genome_Dca56048.1 Alkaloid 7DLGT high pass