PlantSME Plant secondary metabolism enzyme database

Fragaria ananassa (fragaria_ananassa)

Imported from atlas release summary for Fragaria ananassa.

6888
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
POD 654 3.51% CYP76 643 3.45% F3H 516 2.77% T3O 492 2.64% NMT 459 2.46% DWF4/CYP90B1 383 2.06% STR 380 2.04% BR6OX2/CYP85A2 367 1.97% F3'H/CYP75B 354 1.9% CAD 323 1.73% CODM/T6ODM 319 1.71% H6H 319 1.71% CAS 265 1.42% TPS 257 1.38% SMT1/SMT2/SMT3 252 1.35% CSE 240 1.29% GES 229 1.23% CYP71 195 1.05% CYP90D1 188 1.01% TRI/TRII 187 1.0% 7DLH 182 0.98% GS 177 0.95% LAC 177 0.95% HCT 173 0.93% IFR 168 0.9% T16H 164 0.88% G8O/G8H 160 0.86% SLS 155 0.83% IO 149 0.8% TAT 146 0.78% F5H/CYP84A 142 0.76% FNS 131 0.7% PYKS 130 0.7% PMT 121 0.65% CCR 121 0.65% SGD 119 0.64% F3'5'H/CYP75A 118 0.63% COMT 118 0.63% RAS 110 0.59% ANR 106 0.57% BR6OX1/CYP85A1 94 0.5% COR 90 0.48% DFR 89 0.48% BBE 83 0.45% SQE 77 0.41% NCS 73 0.39% LAMT 72 0.39% ANS/LDOX 71 0.38% CPD/CYP90A1 66 0.35% 8HGO 63 0.34% PAL 60 0.32% 16OMT 58 0.31% ROT3/CYP90C1 53 0.28% CCoAOMT 52 0.28% CNMT 49 0.26% AACT 48 0.26% HMGR 47 0.25% FPPS 43 0.23% MPO 42 0.23% CHS 37 0.2% ISY 34 0.18% CPR 34 0.18% SQS/FDFT1 34 0.18% CYP51G1 34 0.18% MVK 33 0.18% DET2 32 0.17% HPPR 27 0.14% CYP719 26 0.14% TYDC_DDC 26 0.14% GGPPS 24 0.13% MVD 24 0.13% CYP80B1 23 0.12% SMO1/SMO2 22 0.12% DXS 22 0.12% MCT/IspD 18 0.1% 6OMT_4OMT_SOMT 16 0.09% ADC 14 0.08% CHI 14 0.08% IDI 14 0.08% DWF1 13 0.07% TDC 11 0.06% ODC 10 0.05% PMK 10 0.05% DWF5 9 0.05% CMK/IspE 9 0.05% DXR 9 0.05% HYD1 8 0.04% HMGS 8 0.04% CPI1 7 0.04% FK 7 0.04% HDS/IspG 7 0.04% MDS/IspF 7 0.04% FLS 6 0.03% DWF7 6 0.03% HDR/IspH 6 0.03% CYP80F1 4 0.02% XMT_MXMT_DXMT 4 0.02% GPPS 3 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 2064 19 BAHD (739) View species results
Alkaloid pathway 1625 26 7DLGT (289) View species results
Phenylpropanoid pathway 1318 12 POD (533) View species results
Flavonoid pathway 924 14 UFGT (635) View species results
Rosmarinic acid pathway 482 7 C4H (166) View species results
Steroid pathway 475 15 CAS (191) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 6875 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1366 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CHS
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Gene Pathway Family Confidence Status Best Target
FanaFAN_r2.3ch00077660 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
FanaFAN_r2.3ch00083040 Flavonoid CHS medium pass CHS__00007__sp_Q8RVK9_CHS_CANSA
FanaFAN_r2.3ch00084600 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
FanaFAN_r2.3ch00294910 Flavonoid CHS medium pass CHS__00009__sp_Q9AU11_PKS1_RUBID
FanaFAN_r2.3ch00300760 Flavonoid CHS medium pass CHS__00009__sp_Q9AU11_PKS1_RUBID
FanaFAN_r2.3ch2Ava0507210 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
FanaFAN_r2.3ch2Ava0510430 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
FanaFAN_r2.3ch2Avb0542240 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
FanaFAN_r2.3ch2Bia0568300 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
FanaFAN_r2.3ch2Bia0581740 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
FanaFAN_r2.3ch2Bia0581760 Flavonoid CHS medium pass CHS__00007__sp_Q8RVK9_CHS_CANSA
FanaFAN_r2.3ch2Bib0589050 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
FanaFAN_r2.3ch2Bib0605250 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
FanaFAN_r2.3ch2Bib0605280 Flavonoid CHS medium pass CHS__00007__sp_Q8RVK9_CHS_CANSA
FanaFAN_r2.3ch2X1a0627560 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
FanaFAN_r2.3ch2X1a0628520 Flavonoid CHS medium pass CHS__00007__sp_Q8RVK9_CHS_CANSA
FanaFAN_r2.3ch2X1a0628550 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
FanaFAN_r2.3ch2X1a0628570 Flavonoid CHS medium pass CHS__00009__sp_Q9AU11_PKS1_RUBID
FanaFAN_r2.3ch2X1b0654710 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
FanaFAN_r2.3ch2X1b0655700 Flavonoid CHS low borderline CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
FanaFAN_r2.3ch2X1b0655710 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
FanaFAN_r2.3ch2X1b0655720 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
FanaFAN_r2.3ch7Ava1484680 Flavonoid CHS medium pass CHS__00009__sp_Q9AU11_PKS1_RUBID
FanaFAN_r2.3ch7Ava1492400 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
FanaFAN_r2.3ch7Avb1514040 Flavonoid CHS low borderline CHS__00009__sp_Q9AU11_PKS1_RUBID
FanaFAN_r2.3ch7Avb1514050 Flavonoid CHS medium pass CHS__00009__sp_Q9AU11_PKS1_RUBID
FanaFAN_r2.3ch7Avb1521820 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
FanaFAN_r2.3ch7Bia1544040 Flavonoid CHS medium pass CHS__00009__sp_Q9AU11_PKS1_RUBID
FanaFAN_r2.3ch7Bia1551740 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
FanaFAN_r2.3ch7Bib1563850 Flavonoid CHS medium pass CHS__00009__sp_Q9AU11_PKS1_RUBID
FanaFAN_r2.3ch7Bib1571330 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
FanaFAN_r2.3ch7X1a1590410 Flavonoid CHS low borderline CHS__00011__sp_Q9FUB7_CHSY_HYPAN
FanaFAN_r2.3ch7X1b1615910 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
FanaFAN_r2.3ch7X2a1637050 Flavonoid CHS low borderline CHS__00009__sp_Q9AU11_PKS1_RUBID
FanaFAN_r2.3ch7X2a1640940 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
FanaFAN_r2.3ch7X2b1656680 Flavonoid CHS low borderline CHS__00009__sp_Q9AU11_PKS1_RUBID
FanaFAN_r2.3ch7X2b1662490 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN