Fragaria ananassa (fragaria_ananassa)
Imported from atlas release summary for Fragaria ananassa.
6888
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
6888
Candidate Genes
C4H
6.45%
BAHD
5.82%
C3'H/CYP98A
5.27%
UGT
4.25%
7DLGT
3.87%
IFS
3.76%
UFGT
3.72%
4CL
3.64%
Other Families
63.21%
More Families (98)
POD
654
3.51%
CYP76
643
3.45%
F3H
516
2.77%
T3O
492
2.64%
NMT
459
2.46%
DWF4/CYP90B1
383
2.06%
STR
380
2.04%
BR6OX2/CYP85A2
367
1.97%
F3'H/CYP75B
354
1.9%
CAD
323
1.73%
CODM/T6ODM
319
1.71%
H6H
319
1.71%
CAS
265
1.42%
TPS
257
1.38%
SMT1/SMT2/SMT3
252
1.35%
CSE
240
1.29%
GES
229
1.23%
CYP71
195
1.05%
CYP90D1
188
1.01%
TRI/TRII
187
1.0%
7DLH
182
0.98%
GS
177
0.95%
LAC
177
0.95%
HCT
173
0.93%
IFR
168
0.9%
T16H
164
0.88%
G8O/G8H
160
0.86%
SLS
155
0.83%
IO
149
0.8%
TAT
146
0.78%
F5H/CYP84A
142
0.76%
FNS
131
0.7%
PYKS
130
0.7%
PMT
121
0.65%
CCR
121
0.65%
SGD
119
0.64%
F3'5'H/CYP75A
118
0.63%
COMT
118
0.63%
RAS
110
0.59%
ANR
106
0.57%
BR6OX1/CYP85A1
94
0.5%
COR
90
0.48%
DFR
89
0.48%
BBE
83
0.45%
SQE
77
0.41%
NCS
73
0.39%
LAMT
72
0.39%
ANS/LDOX
71
0.38%
CPD/CYP90A1
66
0.35%
8HGO
63
0.34%
PAL
60
0.32%
16OMT
58
0.31%
ROT3/CYP90C1
53
0.28%
CCoAOMT
52
0.28%
CNMT
49
0.26%
AACT
48
0.26%
HMGR
47
0.25%
FPPS
43
0.23%
MPO
42
0.23%
CHS
37
0.2%
ISY
34
0.18%
CPR
34
0.18%
SQS/FDFT1
34
0.18%
CYP51G1
34
0.18%
MVK
33
0.18%
DET2
32
0.17%
HPPR
27
0.14%
CYP719
26
0.14%
TYDC_DDC
26
0.14%
GGPPS
24
0.13%
MVD
24
0.13%
CYP80B1
23
0.12%
SMO1/SMO2
22
0.12%
DXS
22
0.12%
MCT/IspD
18
0.1%
6OMT_4OMT_SOMT
16
0.09%
ADC
14
0.08%
CHI
14
0.08%
IDI
14
0.08%
DWF1
13
0.07%
TDC
11
0.06%
ODC
10
0.05%
PMK
10
0.05%
DWF5
9
0.05%
CMK/IspE
9
0.05%
DXR
9
0.05%
HYD1
8
0.04%
HMGS
8
0.04%
CPI1
7
0.04%
FK
7
0.04%
HDS/IspG
7
0.04%
MDS/IspF
7
0.04%
FLS
6
0.03%
DWF7
6
0.03%
HDR/IspH
6
0.03%
CYP80F1
4
0.02%
XMT_MXMT_DXMT
4
0.02%
GPPS
3
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 2064 | 19 | BAHD (739) | View species results |
| Alkaloid pathway | 1625 | 26 | 7DLGT (289) | View species results |
| Phenylpropanoid pathway | 1318 | 12 | POD (533) | View species results |
| Flavonoid pathway | 924 | 14 | UFGT (635) | View species results |
| Rosmarinic acid pathway | 482 | 7 | C4H (166) | View species results |
| Steroid pathway | 475 | 15 | CAS (191) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 6875 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 1366 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| FanaFAN_r2.3ch00006670 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| FanaFAN_r2.3ch00016260 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| FanaFAN_r2.3ch00019030 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| FanaFAN_r2.3ch00026720 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00026770 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00030880 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| FanaFAN_r2.3ch00030890 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| FanaFAN_r2.3ch00034630 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00040140 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| FanaFAN_r2.3ch00041450 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00054830 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| FanaFAN_r2.3ch00062030 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00079900 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| FanaFAN_r2.3ch00080120 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00080130 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00081750 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00081770 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00083240 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00083270 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00083280 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00083290 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00086610 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00097940 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00101190 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00102410 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00102720 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00107140 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00108920 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00116090 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00116250 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00120080 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00123880 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| FanaFAN_r2.3ch00124330 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00124540 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00126070 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00137960 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00137970 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00174660 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00178330 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00181530 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| FanaFAN_r2.3ch00212760 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00218500 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00218640 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00224170 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00224290 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00229390 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00231640 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00241830 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| FanaFAN_r2.3ch00244360 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| FanaFAN_r2.3ch00244740 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |