PlantSME Plant secondary metabolism enzyme database

Fragaria ananassa (fragaria_ananassa)

Imported from atlas release summary for Fragaria ananassa.

6888
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
POD 654 3.51% CYP76 643 3.45% F3H 516 2.77% T3O 492 2.64% NMT 459 2.46% DWF4/CYP90B1 383 2.06% STR 380 2.04% BR6OX2/CYP85A2 367 1.97% F3'H/CYP75B 354 1.9% CAD 323 1.73% CODM/T6ODM 319 1.71% H6H 319 1.71% CAS 265 1.42% TPS 257 1.38% SMT1/SMT2/SMT3 252 1.35% CSE 240 1.29% GES 229 1.23% CYP71 195 1.05% CYP90D1 188 1.01% TRI/TRII 187 1.0% 7DLH 182 0.98% GS 177 0.95% LAC 177 0.95% HCT 173 0.93% IFR 168 0.9% T16H 164 0.88% G8O/G8H 160 0.86% SLS 155 0.83% IO 149 0.8% TAT 146 0.78% F5H/CYP84A 142 0.76% FNS 131 0.7% PYKS 130 0.7% PMT 121 0.65% CCR 121 0.65% SGD 119 0.64% F3'5'H/CYP75A 118 0.63% COMT 118 0.63% RAS 110 0.59% ANR 106 0.57% BR6OX1/CYP85A1 94 0.5% COR 90 0.48% DFR 89 0.48% BBE 83 0.45% SQE 77 0.41% NCS 73 0.39% LAMT 72 0.39% ANS/LDOX 71 0.38% CPD/CYP90A1 66 0.35% 8HGO 63 0.34% PAL 60 0.32% 16OMT 58 0.31% ROT3/CYP90C1 53 0.28% CCoAOMT 52 0.28% CNMT 49 0.26% AACT 48 0.26% HMGR 47 0.25% FPPS 43 0.23% MPO 42 0.23% CHS 37 0.2% ISY 34 0.18% CPR 34 0.18% SQS/FDFT1 34 0.18% CYP51G1 34 0.18% MVK 33 0.18% DET2 32 0.17% HPPR 27 0.14% CYP719 26 0.14% TYDC_DDC 26 0.14% GGPPS 24 0.13% MVD 24 0.13% CYP80B1 23 0.12% SMO1/SMO2 22 0.12% DXS 22 0.12% MCT/IspD 18 0.1% 6OMT_4OMT_SOMT 16 0.09% ADC 14 0.08% CHI 14 0.08% IDI 14 0.08% DWF1 13 0.07% TDC 11 0.06% ODC 10 0.05% PMK 10 0.05% DWF5 9 0.05% CMK/IspE 9 0.05% DXR 9 0.05% HYD1 8 0.04% HMGS 8 0.04% CPI1 7 0.04% FK 7 0.04% HDS/IspG 7 0.04% MDS/IspF 7 0.04% FLS 6 0.03% DWF7 6 0.03% HDR/IspH 6 0.03% CYP80F1 4 0.02% XMT_MXMT_DXMT 4 0.02% GPPS 3 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 2064 19 BAHD (739) View species results
Alkaloid pathway 1625 26 7DLGT (289) View species results
Phenylpropanoid pathway 1318 12 POD (533) View species results
Flavonoid pathway 924 14 UFGT (635) View species results
Rosmarinic acid pathway 482 7 C4H (166) View species results
Steroid pathway 475 15 CAS (191) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 6875 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1366 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
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Gene Pathway Family Confidence Status Best Target
FanaFAN_r2.3ch00037980 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FanaFAN_r2.3ch00044470 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FanaFAN_r2.3ch00046970 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FanaFAN_r2.3ch00056870 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FanaFAN_r2.3ch00062390 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FanaFAN_r2.3ch00074680 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FanaFAN_r2.3ch00137320 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FanaFAN_r2.3ch00139790 Alkaloid NCS medium pass NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FanaFAN_r2.3ch00156390 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FanaFAN_r2.3ch00166170 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FanaFAN_r2.3ch00166220 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FanaFAN_r2.3ch00202430 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FanaFAN_r2.3ch00235230 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FanaFAN_r2.3ch00293810 Alkaloid NCS medium pass NCS__00004__sp_Q4QTJ2_NCS1_PAPSO
FanaFAN_r2.3ch00301380 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FanaFAN_r2.3ch00326430 Alkaloid NCS medium pass NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FanaFAN_r2.3ch1Avb0382780 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FanaFAN_r2.3ch1X2a0468940 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FanaFAN_r2.3ch1X2b0482390 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FanaFAN_r2.3ch1X3a0492920 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FanaFAN_r2.3ch1X3b0497610 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FanaFAN_r2.3ch2Ava0523030 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FanaFAN_r2.3ch2Avb0556830 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FanaFAN_r2.3ch2Bia0582860 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FanaFAN_r2.3ch2Bia0583120 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FanaFAN_r2.3ch2Bib0606710 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FanaFAN_r2.3ch2X1a0611590 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FanaFAN_r2.3ch2X1a0611860 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FanaFAN_r2.3ch3Ava0685990 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FanaFAN_r2.3ch3X1a0773060 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FanaFAN_r2.3ch3X1a0788730 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FanaFAN_r2.3ch3X1a0791910 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FanaFAN_r2.3ch3X1b0828070 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FanaFAN_r2.3ch3X1b0831700 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FanaFAN_r2.3ch3X2a0861310 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FanaFAN_r2.3ch3X2a0862750 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FanaFAN_r2.3ch3X2a0870640 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FanaFAN_r2.3ch3X2b0886400 Alkaloid NCS low borderline NCS__00004__sp_Q4QTJ2_NCS1_PAPSO
FanaFAN_r2.3ch3X2b0892630 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
FanaFAN_r2.3ch4Avb0932480 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FanaFAN_r2.3ch4Bia0941680 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FanaFAN_r2.3ch4Bia0941710 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FanaFAN_r2.3ch4Bia0941840 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FanaFAN_r2.3ch4Bia0941870 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FanaFAN_r2.3ch4Bib0954010 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FanaFAN_r2.3ch4Bib0954040 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FanaFAN_r2.3ch4X1a0978860 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FanaFAN_r2.3ch4X1a0979390 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FanaFAN_r2.3ch4X1b1005200 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
FanaFAN_r2.3ch4X1b1005230 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO