PlantSME Plant secondary metabolism enzyme database

Fragaria ananassa (fragaria_ananassa)

Imported from atlas release summary for Fragaria ananassa.

6888
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
POD 654 3.51% CYP76 643 3.45% F3H 516 2.77% T3O 492 2.64% NMT 459 2.46% DWF4/CYP90B1 383 2.06% STR 380 2.04% BR6OX2/CYP85A2 367 1.97% F3'H/CYP75B 354 1.9% CAD 323 1.73% CODM/T6ODM 319 1.71% H6H 319 1.71% CAS 265 1.42% TPS 257 1.38% SMT1/SMT2/SMT3 252 1.35% CSE 240 1.29% GES 229 1.23% CYP71 195 1.05% CYP90D1 188 1.01% TRI/TRII 187 1.0% 7DLH 182 0.98% GS 177 0.95% LAC 177 0.95% HCT 173 0.93% IFR 168 0.9% T16H 164 0.88% G8O/G8H 160 0.86% SLS 155 0.83% IO 149 0.8% TAT 146 0.78% F5H/CYP84A 142 0.76% FNS 131 0.7% PYKS 130 0.7% PMT 121 0.65% CCR 121 0.65% SGD 119 0.64% F3'5'H/CYP75A 118 0.63% COMT 118 0.63% RAS 110 0.59% ANR 106 0.57% BR6OX1/CYP85A1 94 0.5% COR 90 0.48% DFR 89 0.48% BBE 83 0.45% SQE 77 0.41% NCS 73 0.39% LAMT 72 0.39% ANS/LDOX 71 0.38% CPD/CYP90A1 66 0.35% 8HGO 63 0.34% PAL 60 0.32% 16OMT 58 0.31% ROT3/CYP90C1 53 0.28% CCoAOMT 52 0.28% CNMT 49 0.26% AACT 48 0.26% HMGR 47 0.25% FPPS 43 0.23% MPO 42 0.23% CHS 37 0.2% ISY 34 0.18% CPR 34 0.18% SQS/FDFT1 34 0.18% CYP51G1 34 0.18% MVK 33 0.18% DET2 32 0.17% HPPR 27 0.14% CYP719 26 0.14% TYDC_DDC 26 0.14% GGPPS 24 0.13% MVD 24 0.13% CYP80B1 23 0.12% SMO1/SMO2 22 0.12% DXS 22 0.12% MCT/IspD 18 0.1% 6OMT_4OMT_SOMT 16 0.09% ADC 14 0.08% CHI 14 0.08% IDI 14 0.08% DWF1 13 0.07% TDC 11 0.06% ODC 10 0.05% PMK 10 0.05% DWF5 9 0.05% CMK/IspE 9 0.05% DXR 9 0.05% HYD1 8 0.04% HMGS 8 0.04% CPI1 7 0.04% FK 7 0.04% HDS/IspG 7 0.04% MDS/IspF 7 0.04% FLS 6 0.03% DWF7 6 0.03% HDR/IspH 6 0.03% CYP80F1 4 0.02% XMT_MXMT_DXMT 4 0.02% GPPS 3 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 2064 19 BAHD (739) View species results
Alkaloid pathway 1625 26 7DLGT (289) View species results
Phenylpropanoid pathway 1318 12 POD (533) View species results
Flavonoid pathway 924 14 UFGT (635) View species results
Rosmarinic acid pathway 482 7 C4H (166) View species results
Steroid pathway 475 15 CAS (191) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 6875 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1366 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
FanaFAN_r2.3ch00006670 Rosmarinic Acid 4CL low borderline
FanaFAN_r2.3ch00010430 Rosmarinic Acid 4CL low borderline
FanaFAN_r2.3ch00017880 Rosmarinic Acid 4CL low borderline
FanaFAN_r2.3ch00021490 Rosmarinic Acid 4CL low borderline
FanaFAN_r2.3ch00028510 Rosmarinic Acid 4CL low borderline
FanaFAN_r2.3ch00028610 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch00028630 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch00030900 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch00040020 Rosmarinic Acid 4CL low borderline
FanaFAN_r2.3ch00046030 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch00046040 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch00048310 Rosmarinic Acid 4CL low borderline
FanaFAN_r2.3ch00057060 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch00075150 Rosmarinic Acid 4CL low borderline
FanaFAN_r2.3ch00086320 Rosmarinic Acid 4CL low borderline
FanaFAN_r2.3ch00086870 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch00104200 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch00105430 Rosmarinic Acid 4CL low borderline
FanaFAN_r2.3ch00136590 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch00141950 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch00142420 Rosmarinic Acid 4CL low borderline
FanaFAN_r2.3ch00142840 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch00146710 Rosmarinic Acid 4CL low borderline
FanaFAN_r2.3ch00147080 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch00151290 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch00156360 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch00162340 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch00165270 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch00167300 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch00175920 Rosmarinic Acid 4CL low borderline
FanaFAN_r2.3ch00187300 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch00187770 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch00193520 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch00195510 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch00207630 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch00208420 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch00228490 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch00233690 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch00255980 Rosmarinic Acid 4CL low borderline
FanaFAN_r2.3ch00277290 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch00295480 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch00297890 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch00300060 Rosmarinic Acid 4CL low borderline
FanaFAN_r2.3ch00304570 Rosmarinic Acid 4CL low borderline
FanaFAN_r2.3ch00320660 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch00321270 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch1Ava0348130 Rosmarinic Acid 4CL medium pass
FanaFAN_r2.3ch1Ava0348700 Rosmarinic Acid 4CL low borderline
FanaFAN_r2.3ch1Ava0348730 Rosmarinic Acid 4CL low borderline
FanaFAN_r2.3ch1Ava0359130 Rosmarinic Acid 4CL medium pass