PlantSME Plant secondary metabolism enzyme database

Fragaria ananassa (fragaria_ananassa)

Imported from atlas release summary for Fragaria ananassa.

6888
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
POD 654 3.51% CYP76 643 3.45% F3H 516 2.77% T3O 492 2.64% NMT 459 2.46% DWF4/CYP90B1 383 2.06% STR 380 2.04% BR6OX2/CYP85A2 367 1.97% F3'H/CYP75B 354 1.9% CAD 323 1.73% CODM/T6ODM 319 1.71% H6H 319 1.71% CAS 265 1.42% TPS 257 1.38% SMT1/SMT2/SMT3 252 1.35% CSE 240 1.29% GES 229 1.23% CYP71 195 1.05% CYP90D1 188 1.01% TRI/TRII 187 1.0% 7DLH 182 0.98% GS 177 0.95% LAC 177 0.95% HCT 173 0.93% IFR 168 0.9% T16H 164 0.88% G8O/G8H 160 0.86% SLS 155 0.83% IO 149 0.8% TAT 146 0.78% F5H/CYP84A 142 0.76% FNS 131 0.7% PYKS 130 0.7% PMT 121 0.65% CCR 121 0.65% SGD 119 0.64% F3'5'H/CYP75A 118 0.63% COMT 118 0.63% RAS 110 0.59% ANR 106 0.57% BR6OX1/CYP85A1 94 0.5% COR 90 0.48% DFR 89 0.48% BBE 83 0.45% SQE 77 0.41% NCS 73 0.39% LAMT 72 0.39% ANS/LDOX 71 0.38% CPD/CYP90A1 66 0.35% 8HGO 63 0.34% PAL 60 0.32% 16OMT 58 0.31% ROT3/CYP90C1 53 0.28% CCoAOMT 52 0.28% CNMT 49 0.26% AACT 48 0.26% HMGR 47 0.25% FPPS 43 0.23% MPO 42 0.23% CHS 37 0.2% ISY 34 0.18% CPR 34 0.18% SQS/FDFT1 34 0.18% CYP51G1 34 0.18% MVK 33 0.18% DET2 32 0.17% HPPR 27 0.14% CYP719 26 0.14% TYDC_DDC 26 0.14% GGPPS 24 0.13% MVD 24 0.13% CYP80B1 23 0.12% SMO1/SMO2 22 0.12% DXS 22 0.12% MCT/IspD 18 0.1% 6OMT_4OMT_SOMT 16 0.09% ADC 14 0.08% CHI 14 0.08% IDI 14 0.08% DWF1 13 0.07% TDC 11 0.06% ODC 10 0.05% PMK 10 0.05% DWF5 9 0.05% CMK/IspE 9 0.05% DXR 9 0.05% HYD1 8 0.04% HMGS 8 0.04% CPI1 7 0.04% FK 7 0.04% HDS/IspG 7 0.04% MDS/IspF 7 0.04% FLS 6 0.03% DWF7 6 0.03% HDR/IspH 6 0.03% CYP80F1 4 0.02% XMT_MXMT_DXMT 4 0.02% GPPS 3 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 2064 19 BAHD (739) View species results
Alkaloid pathway 1625 26 7DLGT (289) View species results
Phenylpropanoid pathway 1318 12 POD (533) View species results
Flavonoid pathway 924 14 UFGT (635) View species results
Rosmarinic acid pathway 482 7 C4H (166) View species results
Steroid pathway 475 15 CAS (191) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 6875 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1366 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
Reset
Gene Pathway Family Confidence Status Best Target
FanaFAN_r2.3ch00000650 Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
FanaFAN_r2.3ch00002920 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
FanaFAN_r2.3ch00009510 Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
FanaFAN_r2.3ch00016710 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
FanaFAN_r2.3ch00019880 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
FanaFAN_r2.3ch00021370 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
FanaFAN_r2.3ch00021960 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
FanaFAN_r2.3ch00024010 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
FanaFAN_r2.3ch00025570 Alkaloid NMT low borderline NMT__00040__sp_Q84WW6_ASHH1_ARATH
FanaFAN_r2.3ch00027630 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
FanaFAN_r2.3ch00032670 Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
FanaFAN_r2.3ch00037300 Alkaloid NMT medium pass NMT__00067__sp_Q9T0G7_SUVH9_ARATH
FanaFAN_r2.3ch00039430 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
FanaFAN_r2.3ch00063760 Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
FanaFAN_r2.3ch00068630 Alkaloid NMT medium borderline NMT__00058__sp_Q9FZN8_TCS1_CAMSI
FanaFAN_r2.3ch00072000 Alkaloid NMT medium borderline NMT__00058__sp_Q9FZN8_TCS1_CAMSI
FanaFAN_r2.3ch00072210 Alkaloid NMT medium borderline NMT__00058__sp_Q9FZN8_TCS1_CAMSI
FanaFAN_r2.3ch00072890 Alkaloid NMT low borderline NMT__00042__sp_Q8GZB6_SUVH4_ARATH
FanaFAN_r2.3ch00074440 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
FanaFAN_r2.3ch00077780 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
FanaFAN_r2.3ch00079030 Alkaloid NMT medium pass NMT__00055__sp_Q9FNC7_SUVR2_ARATH
FanaFAN_r2.3ch00082860 Alkaloid NMT low borderline NMT__00017__sp_F4K1J4_ATXR7_ARATH
FanaFAN_r2.3ch00084350 Alkaloid NMT low borderline NMT__00017__sp_F4K1J4_ATXR7_ARATH
FanaFAN_r2.3ch00087150 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
FanaFAN_r2.3ch00094500 Alkaloid NMT medium borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
FanaFAN_r2.3ch00097130 Alkaloid NMT medium borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
FanaFAN_r2.3ch00108930 Alkaloid NMT low borderline NMT__00016__sp_F4JNX3_CMKMT_ARATH
FanaFAN_r2.3ch00117430 Alkaloid NMT low borderline NMT__00055__sp_Q9FNC7_SUVR2_ARATH
FanaFAN_r2.3ch00124840 Alkaloid NMT low borderline NMT__00045__sp_Q8VYX1_PEAM1_WHEAT
FanaFAN_r2.3ch00132050 Alkaloid NMT medium borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
FanaFAN_r2.3ch00135450 Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
FanaFAN_r2.3ch00135830 Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
FanaFAN_r2.3ch00138490 Alkaloid NMT low borderline NMT__00055__sp_Q9FNC7_SUVR2_ARATH
FanaFAN_r2.3ch00138760 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
FanaFAN_r2.3ch00142320 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
FanaFAN_r2.3ch00142480 Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
FanaFAN_r2.3ch00143250 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
FanaFAN_r2.3ch00149830 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
FanaFAN_r2.3ch00154470 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
FanaFAN_r2.3ch00155370 Alkaloid NMT medium borderline NMT__00029__sp_Q42963_PMT1_TOBAC
FanaFAN_r2.3ch00157560 Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
FanaFAN_r2.3ch00168360 Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
FanaFAN_r2.3ch00169190 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
FanaFAN_r2.3ch00169570 Alkaloid NMT low borderline NMT__00023__sp_O82210_ANM12_ARATH
FanaFAN_r2.3ch00170390 Alkaloid NMT medium pass NMT__00035__sp_Q6K431_TRX1_ORYSJ
FanaFAN_r2.3ch00170580 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
FanaFAN_r2.3ch00177690 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
FanaFAN_r2.3ch00180250 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
FanaFAN_r2.3ch00180810 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
FanaFAN_r2.3ch00180910 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO