PlantSME Plant secondary metabolism enzyme database

Fragaria ananassa (fragaria_ananassa)

Imported from atlas release summary for Fragaria ananassa.

6888
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
POD 654 3.51% CYP76 643 3.45% F3H 516 2.77% T3O 492 2.64% NMT 459 2.46% DWF4/CYP90B1 383 2.06% STR 380 2.04% BR6OX2/CYP85A2 367 1.97% F3'H/CYP75B 354 1.9% CAD 323 1.73% CODM/T6ODM 319 1.71% H6H 319 1.71% CAS 265 1.42% TPS 257 1.38% SMT1/SMT2/SMT3 252 1.35% CSE 240 1.29% GES 229 1.23% CYP71 195 1.05% CYP90D1 188 1.01% TRI/TRII 187 1.0% 7DLH 182 0.98% GS 177 0.95% LAC 177 0.95% HCT 173 0.93% IFR 168 0.9% T16H 164 0.88% G8O/G8H 160 0.86% SLS 155 0.83% IO 149 0.8% TAT 146 0.78% F5H/CYP84A 142 0.76% FNS 131 0.7% PYKS 130 0.7% PMT 121 0.65% CCR 121 0.65% SGD 119 0.64% F3'5'H/CYP75A 118 0.63% COMT 118 0.63% RAS 110 0.59% ANR 106 0.57% BR6OX1/CYP85A1 94 0.5% COR 90 0.48% DFR 89 0.48% BBE 83 0.45% SQE 77 0.41% NCS 73 0.39% LAMT 72 0.39% ANS/LDOX 71 0.38% CPD/CYP90A1 66 0.35% 8HGO 63 0.34% PAL 60 0.32% 16OMT 58 0.31% ROT3/CYP90C1 53 0.28% CCoAOMT 52 0.28% CNMT 49 0.26% AACT 48 0.26% HMGR 47 0.25% FPPS 43 0.23% MPO 42 0.23% CHS 37 0.2% ISY 34 0.18% CPR 34 0.18% SQS/FDFT1 34 0.18% CYP51G1 34 0.18% MVK 33 0.18% DET2 32 0.17% HPPR 27 0.14% CYP719 26 0.14% TYDC_DDC 26 0.14% GGPPS 24 0.13% MVD 24 0.13% CYP80B1 23 0.12% SMO1/SMO2 22 0.12% DXS 22 0.12% MCT/IspD 18 0.1% 6OMT_4OMT_SOMT 16 0.09% ADC 14 0.08% CHI 14 0.08% IDI 14 0.08% DWF1 13 0.07% TDC 11 0.06% ODC 10 0.05% PMK 10 0.05% DWF5 9 0.05% CMK/IspE 9 0.05% DXR 9 0.05% HYD1 8 0.04% HMGS 8 0.04% CPI1 7 0.04% FK 7 0.04% HDS/IspG 7 0.04% MDS/IspF 7 0.04% FLS 6 0.03% DWF7 6 0.03% HDR/IspH 6 0.03% CYP80F1 4 0.02% XMT_MXMT_DXMT 4 0.02% GPPS 3 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 2064 19 BAHD (739) View species results
Alkaloid pathway 1625 26 7DLGT (289) View species results
Phenylpropanoid pathway 1318 12 POD (533) View species results
Flavonoid pathway 924 14 UFGT (635) View species results
Rosmarinic acid pathway 482 7 C4H (166) View species results
Steroid pathway 475 15 CAS (191) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 6875 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1366 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
FanaFAN_r2.3ch00046750 Alkaloid IO low borderline
FanaFAN_r2.3ch00047240 Alkaloid IO medium borderline
FanaFAN_r2.3ch00047960 Alkaloid IO low borderline
FanaFAN_r2.3ch00053800 Alkaloid IO medium borderline
FanaFAN_r2.3ch00061000 Alkaloid IO low borderline
FanaFAN_r2.3ch00070050 Alkaloid IO low borderline
FanaFAN_r2.3ch00093240 Alkaloid IO low borderline
FanaFAN_r2.3ch00132690 Alkaloid IO medium borderline
FanaFAN_r2.3ch00135520 Alkaloid IO medium borderline
FanaFAN_r2.3ch00136540 Alkaloid IO medium borderline
FanaFAN_r2.3ch00139800 Alkaloid IO medium borderline
FanaFAN_r2.3ch00141020 Alkaloid IO medium borderline
FanaFAN_r2.3ch00144360 Alkaloid IO medium borderline
FanaFAN_r2.3ch00149230 Alkaloid IO medium borderline
FanaFAN_r2.3ch00151380 Alkaloid IO medium borderline
FanaFAN_r2.3ch00173410 Alkaloid IO medium borderline
FanaFAN_r2.3ch00187590 Alkaloid IO medium borderline
FanaFAN_r2.3ch00193140 Alkaloid IO medium borderline
FanaFAN_r2.3ch00259990 Alkaloid IO medium pass
FanaFAN_r2.3ch00260000 Alkaloid IO medium borderline
FanaFAN_r2.3ch00277530 Alkaloid IO medium borderline
FanaFAN_r2.3ch00277540 Alkaloid IO medium borderline
FanaFAN_r2.3ch00277630 Alkaloid IO medium borderline
FanaFAN_r2.3ch00292000 Alkaloid IO medium borderline
FanaFAN_r2.3ch00296850 Alkaloid IO low borderline
FanaFAN_r2.3ch00308140 Alkaloid IO medium borderline
FanaFAN_r2.3ch1Ava0361630 Alkaloid IO low borderline
FanaFAN_r2.3ch1Avb0383310 Alkaloid IO low borderline
FanaFAN_r2.3ch1Avb0386040 Alkaloid IO medium borderline
FanaFAN_r2.3ch1Bia0399200 Alkaloid IO medium borderline
FanaFAN_r2.3ch1Bia0399240 Alkaloid IO high pass
FanaFAN_r2.3ch1X1a0438440 Alkaloid IO medium borderline
FanaFAN_r2.3ch2Ava0502870 Alkaloid IO low borderline
FanaFAN_r2.3ch2Ava0513300 Alkaloid IO low borderline
FanaFAN_r2.3ch2Ava0513320 Alkaloid IO low borderline
FanaFAN_r2.3ch2Ava0520170 Alkaloid IO medium borderline
FanaFAN_r2.3ch2Ava0532150 Alkaloid IO low borderline
FanaFAN_r2.3ch2Ava0532190 Alkaloid IO medium borderline
FanaFAN_r2.3ch2Avb0537650 Alkaloid IO low borderline
FanaFAN_r2.3ch2Avb0547300 Alkaloid IO low borderline
FanaFAN_r2.3ch2Avb0547360 Alkaloid IO low borderline
FanaFAN_r2.3ch2Avb0553750 Alkaloid IO medium borderline
FanaFAN_r2.3ch2Avb0559580 Alkaloid IO medium borderline
FanaFAN_r2.3ch2Avb0565960 Alkaloid IO low borderline
FanaFAN_r2.3ch2Avb0566010 Alkaloid IO medium borderline
FanaFAN_r2.3ch2Bia0585420 Alkaloid IO medium borderline
FanaFAN_r2.3ch2Bia0586860 Alkaloid IO medium borderline
FanaFAN_r2.3ch2Bib0605710 Alkaloid IO medium borderline
FanaFAN_r2.3ch2X1a0631370 Alkaloid IO medium borderline
FanaFAN_r2.3ch2X1a0632830 Alkaloid IO medium borderline