PlantSME Plant secondary metabolism enzyme database

Fragaria ananassa (fragaria_ananassa)

Imported from atlas release summary for Fragaria ananassa.

6888
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
POD 654 3.51% CYP76 643 3.45% F3H 516 2.77% T3O 492 2.64% NMT 459 2.46% DWF4/CYP90B1 383 2.06% STR 380 2.04% BR6OX2/CYP85A2 367 1.97% F3'H/CYP75B 354 1.9% CAD 323 1.73% CODM/T6ODM 319 1.71% H6H 319 1.71% CAS 265 1.42% TPS 257 1.38% SMT1/SMT2/SMT3 252 1.35% CSE 240 1.29% GES 229 1.23% CYP71 195 1.05% CYP90D1 188 1.01% TRI/TRII 187 1.0% 7DLH 182 0.98% GS 177 0.95% LAC 177 0.95% HCT 173 0.93% IFR 168 0.9% T16H 164 0.88% G8O/G8H 160 0.86% SLS 155 0.83% IO 149 0.8% TAT 146 0.78% F5H/CYP84A 142 0.76% FNS 131 0.7% PYKS 130 0.7% PMT 121 0.65% CCR 121 0.65% SGD 119 0.64% F3'5'H/CYP75A 118 0.63% COMT 118 0.63% RAS 110 0.59% ANR 106 0.57% BR6OX1/CYP85A1 94 0.5% COR 90 0.48% DFR 89 0.48% BBE 83 0.45% SQE 77 0.41% NCS 73 0.39% LAMT 72 0.39% ANS/LDOX 71 0.38% CPD/CYP90A1 66 0.35% 8HGO 63 0.34% PAL 60 0.32% 16OMT 58 0.31% ROT3/CYP90C1 53 0.28% CCoAOMT 52 0.28% CNMT 49 0.26% AACT 48 0.26% HMGR 47 0.25% FPPS 43 0.23% MPO 42 0.23% CHS 37 0.2% ISY 34 0.18% CPR 34 0.18% SQS/FDFT1 34 0.18% CYP51G1 34 0.18% MVK 33 0.18% DET2 32 0.17% HPPR 27 0.14% CYP719 26 0.14% TYDC_DDC 26 0.14% GGPPS 24 0.13% MVD 24 0.13% CYP80B1 23 0.12% SMO1/SMO2 22 0.12% DXS 22 0.12% MCT/IspD 18 0.1% 6OMT_4OMT_SOMT 16 0.09% ADC 14 0.08% CHI 14 0.08% IDI 14 0.08% DWF1 13 0.07% TDC 11 0.06% ODC 10 0.05% PMK 10 0.05% DWF5 9 0.05% CMK/IspE 9 0.05% DXR 9 0.05% HYD1 8 0.04% HMGS 8 0.04% CPI1 7 0.04% FK 7 0.04% HDS/IspG 7 0.04% MDS/IspF 7 0.04% FLS 6 0.03% DWF7 6 0.03% HDR/IspH 6 0.03% CYP80F1 4 0.02% XMT_MXMT_DXMT 4 0.02% GPPS 3 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 2064 19 BAHD (739) View species results
Alkaloid pathway 1625 26 7DLGT (289) View species results
Phenylpropanoid pathway 1318 12 POD (533) View species results
Flavonoid pathway 924 14 UFGT (635) View species results
Rosmarinic acid pathway 482 7 C4H (166) View species results
Steroid pathway 475 15 CAS (191) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 6875 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1366 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFR
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Gene Pathway Family Confidence Status
FanaFAN_r2.3ch00037090 Flavonoid IFR medium pass
FanaFAN_r2.3ch00040380 Flavonoid IFR high pass
FanaFAN_r2.3ch00045290 Flavonoid IFR low borderline
FanaFAN_r2.3ch00052160 Flavonoid IFR medium pass
FanaFAN_r2.3ch00058570 Flavonoid IFR low borderline
FanaFAN_r2.3ch00062740 Flavonoid IFR low borderline
FanaFAN_r2.3ch00069520 Flavonoid IFR low borderline
FanaFAN_r2.3ch00078900 Flavonoid IFR low borderline
FanaFAN_r2.3ch00086400 Flavonoid IFR medium pass
FanaFAN_r2.3ch00095800 Flavonoid IFR high pass
FanaFAN_r2.3ch00096590 Flavonoid IFR low borderline
FanaFAN_r2.3ch00118270 Flavonoid IFR medium pass
FanaFAN_r2.3ch00118280 Flavonoid IFR medium pass
FanaFAN_r2.3ch00131140 Flavonoid IFR low borderline
FanaFAN_r2.3ch00139730 Flavonoid IFR low borderline
FanaFAN_r2.3ch00154040 Flavonoid IFR medium pass
FanaFAN_r2.3ch00177470 Flavonoid IFR low borderline
FanaFAN_r2.3ch00218770 Flavonoid IFR low borderline
FanaFAN_r2.3ch00225240 Flavonoid IFR low borderline
FanaFAN_r2.3ch00231910 Flavonoid IFR low borderline
FanaFAN_r2.3ch00238060 Flavonoid IFR low borderline
FanaFAN_r2.3ch00269210 Flavonoid IFR low borderline
FanaFAN_r2.3ch00277080 Flavonoid IFR low borderline
FanaFAN_r2.3ch00297980 Flavonoid IFR low borderline
FanaFAN_r2.3ch00300680 Flavonoid IFR medium pass
FanaFAN_r2.3ch00322290 Flavonoid IFR high pass
FanaFAN_r2.3ch00331300 Flavonoid IFR medium pass
FanaFAN_r2.3ch2Ava0500440 Flavonoid IFR low borderline
FanaFAN_r2.3ch2Ava0501610 Flavonoid IFR high pass
FanaFAN_r2.3ch2Ava0501650 Flavonoid IFR high pass
FanaFAN_r2.3ch2Ava0501680 Flavonoid IFR high pass
FanaFAN_r2.3ch2Ava0503150 Flavonoid IFR low borderline
FanaFAN_r2.3ch2Ava0513550 Flavonoid IFR low borderline
FanaFAN_r2.3ch2Ava0514740 Flavonoid IFR medium pass
FanaFAN_r2.3ch2Ava0514760 Flavonoid IFR high pass
FanaFAN_r2.3ch2Ava0514810 Flavonoid IFR high pass
FanaFAN_r2.3ch2Ava0515960 Flavonoid IFR low borderline
FanaFAN_r2.3ch2Ava0517960 Flavonoid IFR medium pass
FanaFAN_r2.3ch2Ava0521900 Flavonoid IFR low borderline
FanaFAN_r2.3ch2Ava0531330 Flavonoid IFR high pass
FanaFAN_r2.3ch2Ava0531340 Flavonoid IFR high pass
FanaFAN_r2.3ch2Ava0532880 Flavonoid IFR low borderline
FanaFAN_r2.3ch2Avb0534450 Flavonoid IFR low borderline
FanaFAN_r2.3ch2Avb0536410 Flavonoid IFR medium pass
FanaFAN_r2.3ch2Avb0536440 Flavonoid IFR high pass
FanaFAN_r2.3ch2Avb0536460 Flavonoid IFR low borderline
FanaFAN_r2.3ch2Avb0537340 Flavonoid IFR low borderline
FanaFAN_r2.3ch2Avb0547820 Flavonoid IFR low borderline
FanaFAN_r2.3ch2Avb0549010 Flavonoid IFR medium pass
FanaFAN_r2.3ch2Avb0549040 Flavonoid IFR high pass