PlantSME Plant secondary metabolism enzyme database

Fragaria ananassa (fragaria_ananassa)

Imported from atlas release summary for Fragaria ananassa.

6888
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
POD 654 3.51% CYP76 643 3.45% F3H 516 2.77% T3O 492 2.64% NMT 459 2.46% DWF4/CYP90B1 383 2.06% STR 380 2.04% BR6OX2/CYP85A2 367 1.97% F3'H/CYP75B 354 1.9% CAD 323 1.73% CODM/T6ODM 319 1.71% H6H 319 1.71% CAS 265 1.42% TPS 257 1.38% SMT1/SMT2/SMT3 252 1.35% CSE 240 1.29% GES 229 1.23% CYP71 195 1.05% CYP90D1 188 1.01% TRI/TRII 187 1.0% 7DLH 182 0.98% GS 177 0.95% LAC 177 0.95% HCT 173 0.93% IFR 168 0.9% T16H 164 0.88% G8O/G8H 160 0.86% SLS 155 0.83% IO 149 0.8% TAT 146 0.78% F5H/CYP84A 142 0.76% FNS 131 0.7% PYKS 130 0.7% PMT 121 0.65% CCR 121 0.65% SGD 119 0.64% F3'5'H/CYP75A 118 0.63% COMT 118 0.63% RAS 110 0.59% ANR 106 0.57% BR6OX1/CYP85A1 94 0.5% COR 90 0.48% DFR 89 0.48% BBE 83 0.45% SQE 77 0.41% NCS 73 0.39% LAMT 72 0.39% ANS/LDOX 71 0.38% CPD/CYP90A1 66 0.35% 8HGO 63 0.34% PAL 60 0.32% 16OMT 58 0.31% ROT3/CYP90C1 53 0.28% CCoAOMT 52 0.28% CNMT 49 0.26% AACT 48 0.26% HMGR 47 0.25% FPPS 43 0.23% MPO 42 0.23% CHS 37 0.2% ISY 34 0.18% CPR 34 0.18% SQS/FDFT1 34 0.18% CYP51G1 34 0.18% MVK 33 0.18% DET2 32 0.17% HPPR 27 0.14% CYP719 26 0.14% TYDC_DDC 26 0.14% GGPPS 24 0.13% MVD 24 0.13% CYP80B1 23 0.12% SMO1/SMO2 22 0.12% DXS 22 0.12% MCT/IspD 18 0.1% 6OMT_4OMT_SOMT 16 0.09% ADC 14 0.08% CHI 14 0.08% IDI 14 0.08% DWF1 13 0.07% TDC 11 0.06% ODC 10 0.05% PMK 10 0.05% DWF5 9 0.05% CMK/IspE 9 0.05% DXR 9 0.05% HYD1 8 0.04% HMGS 8 0.04% CPI1 7 0.04% FK 7 0.04% HDS/IspG 7 0.04% MDS/IspF 7 0.04% FLS 6 0.03% DWF7 6 0.03% HDR/IspH 6 0.03% CYP80F1 4 0.02% XMT_MXMT_DXMT 4 0.02% GPPS 3 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 2064 19 BAHD (739) View species results
Alkaloid pathway 1625 26 7DLGT (289) View species results
Phenylpropanoid pathway 1318 12 POD (533) View species results
Flavonoid pathway 924 14 UFGT (635) View species results
Rosmarinic acid pathway 482 7 C4H (166) View species results
Steroid pathway 475 15 CAS (191) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 6875 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1366 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status
FanaFAN_r2.3ch2X1b0665810 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch3Ava0695440 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch3Ava0698630 Phenylpropanoid LAC low borderline
FanaFAN_r2.3ch3Avb0726230 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch3Avb0743200 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch3Avb0743430 Phenylpropanoid LAC low borderline
FanaFAN_r2.3ch3Bia0751210 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch3Bia0751330 Phenylpropanoid LAC low borderline
FanaFAN_r2.3ch3Bib0763750 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch3Bib0763870 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch3X1a0788060 Phenylpropanoid LAC low borderline
FanaFAN_r2.3ch3X1a0801450 Phenylpropanoid LAC low borderline
FanaFAN_r2.3ch3X1b0827460 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch3X1b0841710 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch3X2a0858770 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch3X2b0877210 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch3X2b0882300 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch4Ava0899400 Phenylpropanoid LAC low borderline
FanaFAN_r2.3ch4Avb0935940 Phenylpropanoid LAC low borderline
FanaFAN_r2.3ch4Bia0944540 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch4Bia0944560 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch5Ava1067930 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch5Ava1077580 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch5Ava1078330 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch5Ava1078360 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch5Ava1078370 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch5Avb1096560 Phenylpropanoid LAC low borderline
FanaFAN_r2.3ch5Avb1112440 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch5Bia1146150 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch5Bib1173420 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch5X1a1193550 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch5X1a1197950 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch5X1a1197960 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch5X1b1218110 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch6Av1b1271270 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch6Av2a1285830 Phenylpropanoid LAC low borderline
FanaFAN_r2.3ch6Av2b1305260 Phenylpropanoid LAC low borderline
FanaFAN_r2.3ch6Bia1323640 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch6Bia1329940 Phenylpropanoid LAC low borderline
FanaFAN_r2.3ch6Bia1331960 Phenylpropanoid LAC low borderline
FanaFAN_r2.3ch6Bia1345440 Phenylpropanoid LAC low borderline
FanaFAN_r2.3ch6Bib1368180 Phenylpropanoid LAC low borderline
FanaFAN_r2.3ch6Bib1368210 Phenylpropanoid LAC low borderline
FanaFAN_r2.3ch6X1a1395100 Phenylpropanoid LAC low borderline
FanaFAN_r2.3ch6X1a1406820 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch6X1a1408730 Phenylpropanoid LAC low borderline
FanaFAN_r2.3ch6X1a1409970 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch6X1a1409990 Phenylpropanoid LAC medium pass
FanaFAN_r2.3ch6X1a1412060 Phenylpropanoid LAC low borderline
FanaFAN_r2.3ch6X1b1421910 Phenylpropanoid LAC low borderline