PlantSME Plant secondary metabolism enzyme database

Fragaria ananassa (fragaria_ananassa)

Imported from atlas release summary for Fragaria ananassa.

6888
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
POD 654 3.51% CYP76 643 3.45% F3H 516 2.77% T3O 492 2.64% NMT 459 2.46% DWF4/CYP90B1 383 2.06% STR 380 2.04% BR6OX2/CYP85A2 367 1.97% F3'H/CYP75B 354 1.9% CAD 323 1.73% CODM/T6ODM 319 1.71% H6H 319 1.71% CAS 265 1.42% TPS 257 1.38% SMT1/SMT2/SMT3 252 1.35% CSE 240 1.29% GES 229 1.23% CYP71 195 1.05% CYP90D1 188 1.01% TRI/TRII 187 1.0% 7DLH 182 0.98% GS 177 0.95% LAC 177 0.95% HCT 173 0.93% IFR 168 0.9% T16H 164 0.88% G8O/G8H 160 0.86% SLS 155 0.83% IO 149 0.8% TAT 146 0.78% F5H/CYP84A 142 0.76% FNS 131 0.7% PYKS 130 0.7% PMT 121 0.65% CCR 121 0.65% SGD 119 0.64% F3'5'H/CYP75A 118 0.63% COMT 118 0.63% RAS 110 0.59% ANR 106 0.57% BR6OX1/CYP85A1 94 0.5% COR 90 0.48% DFR 89 0.48% BBE 83 0.45% SQE 77 0.41% NCS 73 0.39% LAMT 72 0.39% ANS/LDOX 71 0.38% CPD/CYP90A1 66 0.35% 8HGO 63 0.34% PAL 60 0.32% 16OMT 58 0.31% ROT3/CYP90C1 53 0.28% CCoAOMT 52 0.28% CNMT 49 0.26% AACT 48 0.26% HMGR 47 0.25% FPPS 43 0.23% MPO 42 0.23% CHS 37 0.2% ISY 34 0.18% CPR 34 0.18% SQS/FDFT1 34 0.18% CYP51G1 34 0.18% MVK 33 0.18% DET2 32 0.17% HPPR 27 0.14% CYP719 26 0.14% TYDC_DDC 26 0.14% GGPPS 24 0.13% MVD 24 0.13% CYP80B1 23 0.12% SMO1/SMO2 22 0.12% DXS 22 0.12% MCT/IspD 18 0.1% 6OMT_4OMT_SOMT 16 0.09% ADC 14 0.08% CHI 14 0.08% IDI 14 0.08% DWF1 13 0.07% TDC 11 0.06% ODC 10 0.05% PMK 10 0.05% DWF5 9 0.05% CMK/IspE 9 0.05% DXR 9 0.05% HYD1 8 0.04% HMGS 8 0.04% CPI1 7 0.04% FK 7 0.04% HDS/IspG 7 0.04% MDS/IspF 7 0.04% FLS 6 0.03% DWF7 6 0.03% HDR/IspH 6 0.03% CYP80F1 4 0.02% XMT_MXMT_DXMT 4 0.02% GPPS 3 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 2064 19 BAHD (739) View species results
Alkaloid pathway 1625 26 7DLGT (289) View species results
Phenylpropanoid pathway 1318 12 POD (533) View species results
Flavonoid pathway 924 14 UFGT (635) View species results
Rosmarinic acid pathway 482 7 C4H (166) View species results
Steroid pathway 475 15 CAS (191) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 6875 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1366 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
FanaFAN_r2.3ch00183090 Alkaloid NMT medium borderline NMT__00005__sp_A0A6C0WW36_CKTCS_CAMSB
FanaFAN_r2.3ch00198230 Alkaloid NMT low borderline NMT__00066__sp_Q9SU94_ANM11_ARATH
FanaFAN_r2.3ch00203160 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
FanaFAN_r2.3ch00210400 Alkaloid NMT medium borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
FanaFAN_r2.3ch00210830 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
FanaFAN_r2.3ch00212620 Alkaloid NMT medium borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
FanaFAN_r2.3ch00213650 Alkaloid NMT low borderline NMT__00067__sp_Q9T0G7_SUVH9_ARATH
FanaFAN_r2.3ch00222440 Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
FanaFAN_r2.3ch00228740 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
FanaFAN_r2.3ch00228820 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
FanaFAN_r2.3ch00258380 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
FanaFAN_r2.3ch00262720 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
FanaFAN_r2.3ch00267250 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
FanaFAN_r2.3ch00271380 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
FanaFAN_r2.3ch00277670 Alkaloid NMT medium pass NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
FanaFAN_r2.3ch00277870 Alkaloid NMT medium pass NMT__00020__sp_O23372_ATXR3_ARATH
FanaFAN_r2.3ch00278030 Alkaloid NMT low borderline NMT__00032__sp_Q5PP37_ATXR2_ARATH
FanaFAN_r2.3ch00299050 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
FanaFAN_r2.3ch00300360 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
FanaFAN_r2.3ch00300480 Alkaloid NMT low borderline NMT__00068__sp_Q9XI84_RBCMT_ARATH
FanaFAN_r2.3ch00301210 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
FanaFAN_r2.3ch00303000 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
FanaFAN_r2.3ch00318840 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
FanaFAN_r2.3ch1Ava0351230 Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
FanaFAN_r2.3ch1Ava0353540 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
FanaFAN_r2.3ch1Ava0355080 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
FanaFAN_r2.3ch1Ava0356620 Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
FanaFAN_r2.3ch1Ava0360000 Alkaloid NMT low borderline NMT__00016__sp_F4JNX3_CMKMT_ARATH
FanaFAN_r2.3ch1Ava0362220 Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
FanaFAN_r2.3ch1Ava0363590 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
FanaFAN_r2.3ch1Ava0369390 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
FanaFAN_r2.3ch1Ava0370500 Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
FanaFAN_r2.3ch1Avb0378120 Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
FanaFAN_r2.3ch1Avb0381690 Alkaloid NMT low borderline NMT__00016__sp_F4JNX3_CMKMT_ARATH
FanaFAN_r2.3ch1Avb0383900 Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
FanaFAN_r2.3ch1Avb0385480 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
FanaFAN_r2.3ch1Avb0392490 Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
FanaFAN_r2.3ch1Bia0398260 Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
FanaFAN_r2.3ch1Bia0399560 Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
FanaFAN_r2.3ch1Bib0413090 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
FanaFAN_r2.3ch1Bib0414260 Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
FanaFAN_r2.3ch1Bib0420270 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
FanaFAN_r2.3ch1X1a0425120 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
FanaFAN_r2.3ch1X1a0426540 Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
FanaFAN_r2.3ch1X1a0428620 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
FanaFAN_r2.3ch1X1a0432340 Alkaloid NMT low borderline NMT__00016__sp_F4JNX3_CMKMT_ARATH
FanaFAN_r2.3ch1X1a0432370 Alkaloid NMT medium pass NMT__00016__sp_F4JNX3_CMKMT_ARATH
FanaFAN_r2.3ch1X1a0440810 Alkaloid NMT low borderline NMT__00040__sp_Q84WW6_ASHH1_ARATH
FanaFAN_r2.3ch1X1b0444100 Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
FanaFAN_r2.3ch1X1b0446260 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH