PlantSME Plant secondary metabolism enzyme database

Fragaria ananassa (fragaria_ananassa)

Imported from atlas release summary for Fragaria ananassa.

6888
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
POD 654 3.51% CYP76 643 3.45% F3H 516 2.77% T3O 492 2.64% NMT 459 2.46% DWF4/CYP90B1 383 2.06% STR 380 2.04% BR6OX2/CYP85A2 367 1.97% F3'H/CYP75B 354 1.9% CAD 323 1.73% CODM/T6ODM 319 1.71% H6H 319 1.71% CAS 265 1.42% TPS 257 1.38% SMT1/SMT2/SMT3 252 1.35% CSE 240 1.29% GES 229 1.23% CYP71 195 1.05% CYP90D1 188 1.01% TRI/TRII 187 1.0% 7DLH 182 0.98% GS 177 0.95% LAC 177 0.95% HCT 173 0.93% IFR 168 0.9% T16H 164 0.88% G8O/G8H 160 0.86% SLS 155 0.83% IO 149 0.8% TAT 146 0.78% F5H/CYP84A 142 0.76% FNS 131 0.7% PYKS 130 0.7% PMT 121 0.65% CCR 121 0.65% SGD 119 0.64% F3'5'H/CYP75A 118 0.63% COMT 118 0.63% RAS 110 0.59% ANR 106 0.57% BR6OX1/CYP85A1 94 0.5% COR 90 0.48% DFR 89 0.48% BBE 83 0.45% SQE 77 0.41% NCS 73 0.39% LAMT 72 0.39% ANS/LDOX 71 0.38% CPD/CYP90A1 66 0.35% 8HGO 63 0.34% PAL 60 0.32% 16OMT 58 0.31% ROT3/CYP90C1 53 0.28% CCoAOMT 52 0.28% CNMT 49 0.26% AACT 48 0.26% HMGR 47 0.25% FPPS 43 0.23% MPO 42 0.23% CHS 37 0.2% ISY 34 0.18% CPR 34 0.18% SQS/FDFT1 34 0.18% CYP51G1 34 0.18% MVK 33 0.18% DET2 32 0.17% HPPR 27 0.14% CYP719 26 0.14% TYDC_DDC 26 0.14% GGPPS 24 0.13% MVD 24 0.13% CYP80B1 23 0.12% SMO1/SMO2 22 0.12% DXS 22 0.12% MCT/IspD 18 0.1% 6OMT_4OMT_SOMT 16 0.09% ADC 14 0.08% CHI 14 0.08% IDI 14 0.08% DWF1 13 0.07% TDC 11 0.06% ODC 10 0.05% PMK 10 0.05% DWF5 9 0.05% CMK/IspE 9 0.05% DXR 9 0.05% HYD1 8 0.04% HMGS 8 0.04% CPI1 7 0.04% FK 7 0.04% HDS/IspG 7 0.04% MDS/IspF 7 0.04% FLS 6 0.03% DWF7 6 0.03% HDR/IspH 6 0.03% CYP80F1 4 0.02% XMT_MXMT_DXMT 4 0.02% GPPS 3 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 2064 19 BAHD (739) View species results
Alkaloid pathway 1625 26 7DLGT (289) View species results
Phenylpropanoid pathway 1318 12 POD (533) View species results
Flavonoid pathway 924 14 UFGT (635) View species results
Rosmarinic acid pathway 482 7 C4H (166) View species results
Steroid pathway 475 15 CAS (191) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 6875 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1366 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status
FanaFAN_r2.3ch2Bib0608440 Alkaloid PMT low borderline
FanaFAN_r2.3ch2X1a0621340 Alkaloid PMT medium pass
FanaFAN_r2.3ch2X1a0636370 Alkaloid PMT low borderline
FanaFAN_r2.3ch2X1b0646750 Alkaloid PMT medium pass
FanaFAN_r2.3ch2X1b0658710 Alkaloid PMT medium pass
FanaFAN_r2.3ch2X1b0663390 Alkaloid PMT low borderline
FanaFAN_r2.3ch2X2a0669110 Alkaloid PMT medium pass
FanaFAN_r2.3ch2X2b0676510 Alkaloid PMT medium pass
FanaFAN_r2.3ch2X2b0682890 Alkaloid PMT low borderline
FanaFAN_r2.3ch3Ava0689380 Alkaloid PMT low borderline
FanaFAN_r2.3ch3Ava0689440 Alkaloid PMT low borderline
FanaFAN_r2.3ch3Ava0710150 Alkaloid PMT medium pass
FanaFAN_r2.3ch3Avb0719840 Alkaloid PMT low borderline
FanaFAN_r2.3ch3Bib0765020 Alkaloid PMT low borderline
FanaFAN_r2.3ch3X1a0804810 Alkaloid PMT medium pass
FanaFAN_r2.3ch3X1a0806630 Alkaloid PMT low borderline
FanaFAN_r2.3ch3X1b0845360 Alkaloid PMT medium pass
FanaFAN_r2.3ch3X2a0853750 Alkaloid PMT low borderline
FanaFAN_r2.3ch3X2b0877430 Alkaloid PMT low borderline
FanaFAN_r2.3ch4Ava0905960 Alkaloid PMT medium pass
FanaFAN_r2.3ch4Avb0928900 Alkaloid PMT medium pass
FanaFAN_r2.3ch4Bia0941910 Alkaloid PMT low borderline
FanaFAN_r2.3ch4Bib0954140 Alkaloid PMT low borderline
FanaFAN_r2.3ch4X1a0976020 Alkaloid PMT medium pass
FanaFAN_r2.3ch4X1b0998140 Alkaloid PMT medium pass
FanaFAN_r2.3ch4X1b1002310 Alkaloid PMT medium pass
FanaFAN_r2.3ch4X2a1026950 Alkaloid PMT medium borderline
FanaFAN_r2.3ch4X2b1035930 Alkaloid PMT medium borderline
FanaFAN_r2.3ch5Ava1042760 Alkaloid PMT medium borderline
FanaFAN_r2.3ch5Ava1056250 Alkaloid PMT low borderline
FanaFAN_r2.3ch5Ava1058010 Alkaloid PMT medium pass
FanaFAN_r2.3ch5Avb1088020 Alkaloid PMT medium borderline
FanaFAN_r2.3ch5Avb1096600 Alkaloid PMT medium borderline
FanaFAN_r2.3ch5Avb1101230 Alkaloid PMT low borderline
FanaFAN_r2.3ch5Avb1107060 Alkaloid PMT low borderline
FanaFAN_r2.3ch5Bia1127370 Alkaloid PMT medium borderline
FanaFAN_r2.3ch5Bia1129810 Alkaloid PMT low borderline
FanaFAN_r2.3ch5Bia1140960 Alkaloid PMT low borderline
FanaFAN_r2.3ch5Bib1154450 Alkaloid PMT medium borderline
FanaFAN_r2.3ch5Bib1157160 Alkaloid PMT low borderline
FanaFAN_r2.3ch5Bib1168050 Alkaloid PMT low borderline
FanaFAN_r2.3ch5X1a1180700 Alkaloid PMT medium pass
FanaFAN_r2.3ch5X1a1188540 Alkaloid PMT low borderline
FanaFAN_r2.3ch5X1a1190180 Alkaloid PMT low borderline
FanaFAN_r2.3ch5X1b1205600 Alkaloid PMT low borderline
FanaFAN_r2.3ch5X1b1213200 Alkaloid PMT medium pass
FanaFAN_r2.3ch5X1b1214850 Alkaloid PMT medium pass
FanaFAN_r2.3ch5X1b1215050 Alkaloid PMT low borderline
FanaFAN_r2.3ch5X2a1229810 Alkaloid PMT medium borderline
FanaFAN_r2.3ch5X2a1232300 Alkaloid PMT low borderline