PlantSME Plant secondary metabolism enzyme database

Fragaria ananassa (fragaria_ananassa)

Imported from atlas release summary for Fragaria ananassa.

6888
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
POD 654 3.51% CYP76 643 3.45% F3H 516 2.77% T3O 492 2.64% NMT 459 2.46% DWF4/CYP90B1 383 2.06% STR 380 2.04% BR6OX2/CYP85A2 367 1.97% F3'H/CYP75B 354 1.9% CAD 323 1.73% CODM/T6ODM 319 1.71% H6H 319 1.71% CAS 265 1.42% TPS 257 1.38% SMT1/SMT2/SMT3 252 1.35% CSE 240 1.29% GES 229 1.23% CYP71 195 1.05% CYP90D1 188 1.01% TRI/TRII 187 1.0% 7DLH 182 0.98% GS 177 0.95% LAC 177 0.95% HCT 173 0.93% IFR 168 0.9% T16H 164 0.88% G8O/G8H 160 0.86% SLS 155 0.83% IO 149 0.8% TAT 146 0.78% F5H/CYP84A 142 0.76% FNS 131 0.7% PYKS 130 0.7% PMT 121 0.65% CCR 121 0.65% SGD 119 0.64% F3'5'H/CYP75A 118 0.63% COMT 118 0.63% RAS 110 0.59% ANR 106 0.57% BR6OX1/CYP85A1 94 0.5% COR 90 0.48% DFR 89 0.48% BBE 83 0.45% SQE 77 0.41% NCS 73 0.39% LAMT 72 0.39% ANS/LDOX 71 0.38% CPD/CYP90A1 66 0.35% 8HGO 63 0.34% PAL 60 0.32% 16OMT 58 0.31% ROT3/CYP90C1 53 0.28% CCoAOMT 52 0.28% CNMT 49 0.26% AACT 48 0.26% HMGR 47 0.25% FPPS 43 0.23% MPO 42 0.23% CHS 37 0.2% ISY 34 0.18% CPR 34 0.18% SQS/FDFT1 34 0.18% CYP51G1 34 0.18% MVK 33 0.18% DET2 32 0.17% HPPR 27 0.14% CYP719 26 0.14% TYDC_DDC 26 0.14% GGPPS 24 0.13% MVD 24 0.13% CYP80B1 23 0.12% SMO1/SMO2 22 0.12% DXS 22 0.12% MCT/IspD 18 0.1% 6OMT_4OMT_SOMT 16 0.09% ADC 14 0.08% CHI 14 0.08% IDI 14 0.08% DWF1 13 0.07% TDC 11 0.06% ODC 10 0.05% PMK 10 0.05% DWF5 9 0.05% CMK/IspE 9 0.05% DXR 9 0.05% HYD1 8 0.04% HMGS 8 0.04% CPI1 7 0.04% FK 7 0.04% HDS/IspG 7 0.04% MDS/IspF 7 0.04% FLS 6 0.03% DWF7 6 0.03% HDR/IspH 6 0.03% CYP80F1 4 0.02% XMT_MXMT_DXMT 4 0.02% GPPS 3 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 2064 19 BAHD (739) View species results
Alkaloid pathway 1625 26 7DLGT (289) View species results
Phenylpropanoid pathway 1318 12 POD (533) View species results
Flavonoid pathway 924 14 UFGT (635) View species results
Rosmarinic acid pathway 482 7 C4H (166) View species results
Steroid pathway 475 15 CAS (191) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 6875 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1366 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
FanaFAN_r2.3ch7Bia1562310 Alkaloid 16OMT medium borderline
FanaFAN_r2.3ch7Bib1575030 Alkaloid 16OMT medium borderline
FanaFAN_r2.3ch7Bib1582640 Alkaloid 16OMT medium borderline
FanaFAN_r2.3ch7X1a1597010 Alkaloid 16OMT medium borderline
FanaFAN_r2.3ch7X1a1607440 Alkaloid 16OMT medium borderline
FanaFAN_r2.3ch7X1b1632870 Alkaloid 16OMT medium borderline
FanaFAN_r2.3ch7X2a1654710 Alkaloid 16OMT medium borderline
FanaFAN_r2.3ch7X2b1676110 Alkaloid 16OMT medium borderline
FanaFAN_r2.3ch00044020 Alkaloid 6OMT_4OMT_SOMT medium borderline
FanaFAN_r2.3ch00075230 Alkaloid 6OMT_4OMT_SOMT medium borderline
FanaFAN_r2.3ch00169420 Alkaloid 6OMT_4OMT_SOMT low borderline
FanaFAN_r2.3ch2X1b0646310 Alkaloid 6OMT_4OMT_SOMT medium borderline
FanaFAN_r2.3ch3Ava0690740 Alkaloid 6OMT_4OMT_SOMT medium borderline
FanaFAN_r2.3ch3Avb0721160 Alkaloid 6OMT_4OMT_SOMT medium borderline
FanaFAN_r2.3ch3X1a0783330 Alkaloid 6OMT_4OMT_SOMT medium borderline
FanaFAN_r2.3ch3X2a0854760 Alkaloid 6OMT_4OMT_SOMT medium pass
FanaFAN_r2.3ch3X2a0854770 Alkaloid 6OMT_4OMT_SOMT medium borderline
FanaFAN_r2.3ch4Avb0940730 Alkaloid 6OMT_4OMT_SOMT low borderline
FanaFAN_r2.3ch4Bia0951570 Alkaloid 6OMT_4OMT_SOMT low borderline
FanaFAN_r2.3ch4Bib0963930 Alkaloid 6OMT_4OMT_SOMT low borderline
FanaFAN_r2.3ch4X1a0992740 Alkaloid 6OMT_4OMT_SOMT low borderline
FanaFAN_r2.3ch4X1b1019920 Alkaloid 6OMT_4OMT_SOMT low borderline
FanaFAN_r2.3ch4X2b1033710 Alkaloid 6OMT_4OMT_SOMT low borderline
FanaFAN_r2.3ch5Avb1096640 Alkaloid 6OMT_4OMT_SOMT medium borderline
FanaFAN_r2.3ch00002800 Alkaloid 7DLGT medium pass
FanaFAN_r2.3ch00003540 Alkaloid 7DLGT medium pass
FanaFAN_r2.3ch00008680 Alkaloid 7DLGT low borderline
FanaFAN_r2.3ch00010040 Alkaloid 7DLGT low borderline
FanaFAN_r2.3ch00011990 Alkaloid 7DLGT low borderline
FanaFAN_r2.3ch00014340 Alkaloid 7DLGT low borderline
FanaFAN_r2.3ch00014350 Alkaloid 7DLGT medium pass
FanaFAN_r2.3ch00015670 Alkaloid 7DLGT low borderline
FanaFAN_r2.3ch00017950 Alkaloid 7DLGT medium pass
FanaFAN_r2.3ch00020140 Alkaloid 7DLGT low borderline
FanaFAN_r2.3ch00025500 Alkaloid 7DLGT low borderline
FanaFAN_r2.3ch00026790 Alkaloid 7DLGT medium pass
FanaFAN_r2.3ch00027960 Alkaloid 7DLGT low borderline
FanaFAN_r2.3ch00029140 Alkaloid 7DLGT low borderline
FanaFAN_r2.3ch00032940 Alkaloid 7DLGT medium pass
FanaFAN_r2.3ch00043940 Alkaloid 7DLGT high pass
FanaFAN_r2.3ch00059530 Alkaloid 7DLGT high pass
FanaFAN_r2.3ch00059540 Alkaloid 7DLGT low borderline
FanaFAN_r2.3ch00065040 Alkaloid 7DLGT low borderline
FanaFAN_r2.3ch00065070 Alkaloid 7DLGT low borderline
FanaFAN_r2.3ch00065090 Alkaloid 7DLGT medium pass
FanaFAN_r2.3ch00065560 Alkaloid 7DLGT low borderline
FanaFAN_r2.3ch00066790 Alkaloid 7DLGT low borderline
FanaFAN_r2.3ch00069840 Alkaloid 7DLGT low borderline
FanaFAN_r2.3ch00071000 Alkaloid 7DLGT low borderline
FanaFAN_r2.3ch00077950 Alkaloid 7DLGT low borderline