PlantSME Plant secondary metabolism enzyme database

Fragaria ananassa (fragaria_ananassa)

Imported from atlas release summary for Fragaria ananassa.

6888
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
POD 654 3.51% CYP76 643 3.45% F3H 516 2.77% T3O 492 2.64% NMT 459 2.46% DWF4/CYP90B1 383 2.06% STR 380 2.04% BR6OX2/CYP85A2 367 1.97% F3'H/CYP75B 354 1.9% CAD 323 1.73% CODM/T6ODM 319 1.71% H6H 319 1.71% CAS 265 1.42% TPS 257 1.38% SMT1/SMT2/SMT3 252 1.35% CSE 240 1.29% GES 229 1.23% CYP71 195 1.05% CYP90D1 188 1.01% TRI/TRII 187 1.0% 7DLH 182 0.98% GS 177 0.95% LAC 177 0.95% HCT 173 0.93% IFR 168 0.9% T16H 164 0.88% G8O/G8H 160 0.86% SLS 155 0.83% IO 149 0.8% TAT 146 0.78% F5H/CYP84A 142 0.76% FNS 131 0.7% PYKS 130 0.7% PMT 121 0.65% CCR 121 0.65% SGD 119 0.64% F3'5'H/CYP75A 118 0.63% COMT 118 0.63% RAS 110 0.59% ANR 106 0.57% BR6OX1/CYP85A1 94 0.5% COR 90 0.48% DFR 89 0.48% BBE 83 0.45% SQE 77 0.41% NCS 73 0.39% LAMT 72 0.39% ANS/LDOX 71 0.38% CPD/CYP90A1 66 0.35% 8HGO 63 0.34% PAL 60 0.32% 16OMT 58 0.31% ROT3/CYP90C1 53 0.28% CCoAOMT 52 0.28% CNMT 49 0.26% AACT 48 0.26% HMGR 47 0.25% FPPS 43 0.23% MPO 42 0.23% CHS 37 0.2% ISY 34 0.18% CPR 34 0.18% SQS/FDFT1 34 0.18% CYP51G1 34 0.18% MVK 33 0.18% DET2 32 0.17% HPPR 27 0.14% CYP719 26 0.14% TYDC_DDC 26 0.14% GGPPS 24 0.13% MVD 24 0.13% CYP80B1 23 0.12% SMO1/SMO2 22 0.12% DXS 22 0.12% MCT/IspD 18 0.1% 6OMT_4OMT_SOMT 16 0.09% ADC 14 0.08% CHI 14 0.08% IDI 14 0.08% DWF1 13 0.07% TDC 11 0.06% ODC 10 0.05% PMK 10 0.05% DWF5 9 0.05% CMK/IspE 9 0.05% DXR 9 0.05% HYD1 8 0.04% HMGS 8 0.04% CPI1 7 0.04% FK 7 0.04% HDS/IspG 7 0.04% MDS/IspF 7 0.04% FLS 6 0.03% DWF7 6 0.03% HDR/IspH 6 0.03% CYP80F1 4 0.02% XMT_MXMT_DXMT 4 0.02% GPPS 3 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 2064 19 BAHD (739) View species results
Alkaloid pathway 1625 26 7DLGT (289) View species results
Phenylpropanoid pathway 1318 12 POD (533) View species results
Flavonoid pathway 924 14 UFGT (635) View species results
Rosmarinic acid pathway 482 7 C4H (166) View species results
Steroid pathway 475 15 CAS (191) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 6875 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1366 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Gene Pathway Family Confidence Status Best Target
FanaFAN_r2.3ch4X2a1023990 Phenylpropanoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
FanaFAN_r2.3ch5Ava1040400 Phenylpropanoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
FanaFAN_r2.3ch5Ava1042170 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
FanaFAN_r2.3ch5Ava1044780 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
FanaFAN_r2.3ch5Ava1057350 Phenylpropanoid 4CL medium pass 4CL__00014__sp_Q84P24_4CLL6_ARATH
FanaFAN_r2.3ch5Ava1062900 Phenylpropanoid 4CL medium pass 4CL__00014__sp_Q84P24_4CLL6_ARATH
FanaFAN_r2.3ch5Avb1085480 Phenylpropanoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
FanaFAN_r2.3ch5Avb1087410 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
FanaFAN_r2.3ch5Avb1102380 Phenylpropanoid 4CL medium pass 4CL__00014__sp_Q84P24_4CLL6_ARATH
FanaFAN_r2.3ch5Avb1108000 Phenylpropanoid 4CL medium pass 4CL__00014__sp_Q84P24_4CLL6_ARATH
FanaFAN_r2.3ch5Bia1124910 Phenylpropanoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
FanaFAN_r2.3ch5Bia1125270 Phenylpropanoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
FanaFAN_r2.3ch5Bia1126920 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
FanaFAN_r2.3ch5Bia1129190 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
FanaFAN_r2.3ch5Bia1141960 Phenylpropanoid 4CL medium pass 4CL__00014__sp_Q84P24_4CLL6_ARATH
FanaFAN_r2.3ch5Bib1153910 Phenylpropanoid 4CL low borderline 4CL__00007__sp_Q42524_4CL1_ARATH
FanaFAN_r2.3ch5Bib1156540 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
FanaFAN_r2.3ch5Bib1169090 Phenylpropanoid 4CL medium pass 4CL__00014__sp_Q84P24_4CLL6_ARATH
FanaFAN_r2.3ch5X1a1177580 Phenylpropanoid 4CL low borderline 4CL__00007__sp_Q42524_4CL1_ARATH
FanaFAN_r2.3ch5X1a1180030 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
FanaFAN_r2.3ch5X1a1180040 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
FanaFAN_r2.3ch5X1a1189610 Phenylpropanoid 4CL medium pass 4CL__00014__sp_Q84P24_4CLL6_ARATH
FanaFAN_r2.3ch5X1b1201940 Phenylpropanoid 4CL low borderline 4CL__00007__sp_Q42524_4CL1_ARATH
FanaFAN_r2.3ch5X1b1204540 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
FanaFAN_r2.3ch5X1b1214320 Phenylpropanoid 4CL medium pass 4CL__00014__sp_Q84P24_4CLL6_ARATH
FanaFAN_r2.3ch5X2a1227570 Phenylpropanoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
FanaFAN_r2.3ch5X2a1229420 Phenylpropanoid 4CL low borderline 4CL__00007__sp_Q42524_4CL1_ARATH
FanaFAN_r2.3ch5X2a1231570 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
FanaFAN_r2.3ch5X2b1236900 Phenylpropanoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
FanaFAN_r2.3ch5X2b1241080 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
FanaFAN_r2.3ch6Av1a1248950 Phenylpropanoid 4CL low borderline 4CL__00018__sp_Q9S777_4CL3_ARATH
FanaFAN_r2.3ch6Av1a1258010 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
FanaFAN_r2.3ch6Av1b1264550 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
FanaFAN_r2.3ch6Av1b1274150 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
FanaFAN_r2.3ch6Av2a1284010 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
FanaFAN_r2.3ch6Av2a1295560 Phenylpropanoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
FanaFAN_r2.3ch6Av2b1303330 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
FanaFAN_r2.3ch6Av2b1314630 Phenylpropanoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
FanaFAN_r2.3ch6Bia1318520 Phenylpropanoid 4CL low borderline 4CL__00002__sp_I3PB37_4CL1_PETHY
FanaFAN_r2.3ch6Bia1335640 Phenylpropanoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
FanaFAN_r2.3ch6Bia1344470 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
FanaFAN_r2.3ch6Bia1352630 Phenylpropanoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
FanaFAN_r2.3ch6Bib1357060 Phenylpropanoid 4CL low borderline 4CL__00002__sp_I3PB37_4CL1_PETHY
FanaFAN_r2.3ch6Bib1373910 Phenylpropanoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
FanaFAN_r2.3ch6Bib1381930 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
FanaFAN_r2.3ch6Bib1390220 Phenylpropanoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
FanaFAN_r2.3ch6X1a1390740 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
FanaFAN_r2.3ch6X1a1400750 Phenylpropanoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
FanaFAN_r2.3ch6X1a1410290 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
FanaFAN_r2.3ch6X1b1419040 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH