PlantSME Plant secondary metabolism enzyme database

Gossypium tomentosum (gossypium_tomentosum)

Imported from atlas release summary for Gossypium tomentosum.

5872
Candidate Protein Records
4696
Pathway-Level Records
11761
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1391 21 BAHD (633) View species results
Alkaloid pathway 1101 26 NMT (205) View species results
Phenylpropanoid pathway 1001 12 POD (408) View species results
Flavonoid pathway 512 12 UFGT (312) View species results
Rosmarinic acid pathway 384 7 C4H (133) View species results
Steroid pathway 307 13 CAS (153) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4458 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
Reset
Protein/Isoform Record Pathway Family Confidence Status
GtomD13G0010950.1 Rosmarinic Acid C4H low borderline
GtomD13G0015350.1 Rosmarinic Acid C4H low borderline
GtomD13G0016610.1 Rosmarinic Acid C4H medium pass
GtomD13G0016760.1 Rosmarinic Acid C4H medium pass
GtomD13G0016790.1 Rosmarinic Acid C4H low borderline
GtomD13G0019490.1 Rosmarinic Acid C4H low borderline
GtomD13G0019560.1 Rosmarinic Acid C4H low borderline
GtomD13G0019570.1 Rosmarinic Acid C4H low borderline
GtomD13G0024970.1 Rosmarinic Acid C4H medium pass
GtomD13G0028680.1 Rosmarinic Acid C4H medium pass
Gtomscaffold_2600001220.1 Rosmarinic Acid C4H low borderline
Gtomscaffold_2600001230.1 Rosmarinic Acid C4H low borderline
Gtomscaffold_2600001240.1 Rosmarinic Acid C4H low borderline
Gtomscaffold_2600001240.2 Rosmarinic Acid C4H low borderline
Gtomscaffold_3360001690.1 Rosmarinic Acid C4H low borderline
Gtomscaffold_3360001710.1 Rosmarinic Acid C4H low borderline
Gtomscaffold_4860002310.1 Rosmarinic Acid C4H low borderline
GtomA01G0014820.1 Rosmarinic Acid CPR medium pass
GtomA01G0014830.1 Rosmarinic Acid CPR medium pass
GtomA01G0026670.1 Rosmarinic Acid CPR medium pass
GtomA03G0014170.1 Rosmarinic Acid CPR low borderline
GtomA05G0000640.1 Rosmarinic Acid CPR medium pass
GtomA05G0023730.1 Rosmarinic Acid CPR medium pass
GtomA05G0040650.1 Rosmarinic Acid CPR medium pass
GtomA07G0013610.1 Rosmarinic Acid CPR medium pass
GtomA07G0013610.2 Rosmarinic Acid CPR medium pass
GtomA08G0003080.1 Rosmarinic Acid CPR medium pass
GtomA09G0019470.1 Rosmarinic Acid CPR medium pass
GtomD01G0009960.1 Rosmarinic Acid CPR low borderline
GtomD01G0009970.1 Rosmarinic Acid CPR medium pass
GtomD01G0014900.1 Rosmarinic Acid CPR medium pass
GtomD01G0027570.1 Rosmarinic Acid CPR medium pass
GtomD01G0027570.2 Rosmarinic Acid CPR medium pass
GtomD04G0012560.1 Rosmarinic Acid CPR medium pass
GtomD04G0013850.1 Rosmarinic Acid CPR medium pass
GtomD05G0000630.1 Rosmarinic Acid CPR medium pass
GtomD05G0016570.1 Rosmarinic Acid CPR medium pass
GtomD05G0024120.1 Rosmarinic Acid CPR medium pass
GtomD07G0013600.1 Rosmarinic Acid CPR medium pass
GtomD07G0013600.2 Rosmarinic Acid CPR medium pass
GtomD08G0003220.1 Rosmarinic Acid CPR medium pass
GtomD08G0012350.1 Rosmarinic Acid CPR medium pass
GtomD08G0030600.1 Rosmarinic Acid CPR medium pass
GtomD09G0019380.1 Rosmarinic Acid CPR medium pass
GtomD10G0016610.1 Rosmarinic Acid CPR medium pass
GtomD11G0014290.1 Rosmarinic Acid CPR medium pass
GtomD11G0026370.1 Rosmarinic Acid CPR medium pass
GtomA03G0002240.1 Rosmarinic Acid HPPR medium pass
GtomA03G0002250.1 Rosmarinic Acid HPPR medium pass
GtomA05G0013900.1 Rosmarinic Acid HPPR medium pass