PlantSME Plant secondary metabolism enzyme database

Gossypium tomentosum (gossypium_tomentosum)

Imported from atlas release summary for Gossypium tomentosum.

5872
Candidate Protein Records
4696
Pathway-Level Records
11761
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1391 21 BAHD (633) View species results
Alkaloid pathway 1101 26 NMT (205) View species results
Phenylpropanoid pathway 1001 12 POD (408) View species results
Flavonoid pathway 512 12 UFGT (312) View species results
Rosmarinic acid pathway 384 7 C4H (133) View species results
Steroid pathway 307 13 CAS (153) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4458 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
GtomA05G0014230.1 Alkaloid H6H low borderline
GtomA05G0014230.2 Alkaloid H6H low borderline
GtomA05G0014230.3 Alkaloid H6H low borderline
GtomA05G0018870.1 Alkaloid H6H medium borderline
GtomA05G0025990.1 Alkaloid H6H medium pass
GtomA05G0044150.1 Alkaloid H6H medium borderline
GtomA05G0044150.2 Alkaloid H6H medium borderline
GtomA05G0044170.1 Alkaloid H6H medium borderline
GtomA06G0016280.1 Alkaloid H6H low borderline
GtomA06G0016280.2 Alkaloid H6H low borderline
GtomA06G0018050.1 Alkaloid H6H medium borderline
GtomA07G0009870.1 Alkaloid H6H medium borderline
GtomA07G0021370.1 Alkaloid H6H low borderline
GtomA07G0024660.1 Alkaloid H6H medium borderline
GtomA07G0024670.1 Alkaloid H6H medium borderline
GtomA08G0004950.1 Alkaloid H6H low borderline
GtomA08G0007200.1 Alkaloid H6H medium borderline
GtomA08G0010620.1 Alkaloid H6H medium pass
GtomA08G0013150.1 Alkaloid H6H medium borderline
GtomA08G0022160.1 Alkaloid H6H medium borderline
GtomA08G0022170.1 Alkaloid H6H medium borderline
GtomA08G0022170.2 Alkaloid H6H medium borderline
GtomA08G0022180.1 Alkaloid H6H medium borderline
GtomA08G0022210.1 Alkaloid H6H medium borderline
GtomA09G0000540.1 Alkaloid H6H medium pass
GtomA09G0007310.1 Alkaloid H6H medium borderline
GtomA09G0007320.1 Alkaloid H6H medium pass
GtomA09G0009520.1 Alkaloid H6H low borderline
GtomA09G0010300.1 Alkaloid H6H low borderline
GtomA09G0019390.1 Alkaloid H6H medium borderline
GtomA09G0026270.1 Alkaloid H6H medium borderline
GtomA10G0007410.1 Alkaloid H6H low borderline
GtomA10G0007570.1 Alkaloid H6H low borderline
GtomA10G0008950.1 Alkaloid H6H low borderline
GtomA10G0008960.1 Alkaloid H6H low borderline
GtomA10G0008970.1 Alkaloid H6H low borderline
GtomA10G0019480.1 Alkaloid H6H medium borderline
GtomA11G0002560.1 Alkaloid H6H low borderline
GtomA11G0004850.1 Alkaloid H6H low borderline
GtomA11G0011520.1 Alkaloid H6H medium borderline
GtomA11G0014830.1 Alkaloid H6H medium borderline
GtomA11G0019880.1 Alkaloid H6H high pass
GtomA11G0027460.1 Alkaloid H6H low borderline
GtomA12G0006550.1 Alkaloid H6H high pass
GtomA12G0014310.1 Alkaloid H6H low borderline
GtomA12G0028020.1 Alkaloid H6H medium borderline
GtomA12G0028020.2 Alkaloid H6H medium borderline
GtomA13G0001780.1 Alkaloid H6H low borderline
GtomA13G0008060.1 Alkaloid H6H medium borderline
GtomA13G0024460.1 Alkaloid H6H low borderline