PlantSME Plant secondary metabolism enzyme database

Gossypium tomentosum (gossypium_tomentosum)

Imported from atlas release summary for Gossypium tomentosum.

5872
Candidate Protein Records
4696
Pathway-Level Records
11761
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1391 21 BAHD (633) View species results
Alkaloid pathway 1101 26 NMT (205) View species results
Phenylpropanoid pathway 1001 12 POD (408) View species results
Flavonoid pathway 512 12 UFGT (312) View species results
Rosmarinic acid pathway 384 7 C4H (133) View species results
Steroid pathway 307 13 CAS (153) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4458 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
Reset
Protein/Isoform Record Pathway Family Confidence Status
GtomD13G0028410.1 Rosmarinic Acid 4CL medium pass
GtomD13G0028410.2 Rosmarinic Acid 4CL medium pass
Gtomscaffold_2770001390.1 Rosmarinic Acid 4CL medium pass
Gtomscaffold_2770001420.1 Rosmarinic Acid 4CL medium pass
Gtomscaffold_2770001460.1 Rosmarinic Acid 4CL medium pass
GtomA01G0005180.1 Rosmarinic Acid C4H low borderline
GtomA01G0005190.1 Rosmarinic Acid C4H low borderline
GtomA01G0005200.1 Rosmarinic Acid C4H low borderline
GtomA01G0005210.1 Rosmarinic Acid C4H low borderline
GtomA01G0007830.1 Rosmarinic Acid C4H medium pass
GtomA01G0007840.1 Rosmarinic Acid C4H low borderline
GtomA01G0009450.1 Rosmarinic Acid C4H low borderline
GtomA01G0010420.1 Rosmarinic Acid C4H low borderline
GtomA01G0010440.1 Rosmarinic Acid C4H medium pass
GtomA01G0010470.1 Rosmarinic Acid C4H low borderline
GtomA01G0010490.1 Rosmarinic Acid C4H low borderline
GtomA01G0010510.1 Rosmarinic Acid C4H low borderline
GtomA01G0010520.1 Rosmarinic Acid C4H low borderline
GtomA01G0010530.1 Rosmarinic Acid C4H low borderline
GtomA01G0010540.1 Rosmarinic Acid C4H medium pass
GtomA01G0010560.1 Rosmarinic Acid C4H low borderline
GtomA01G0011180.1 Rosmarinic Acid C4H low borderline
GtomA01G0013830.1 Rosmarinic Acid C4H low borderline
GtomA01G0013950.1 Rosmarinic Acid C4H low borderline
GtomA01G0019380.1 Rosmarinic Acid C4H low borderline
GtomA01G0023120.1 Rosmarinic Acid C4H medium pass
GtomA01G0023130.1 Rosmarinic Acid C4H medium pass
GtomA01G0023140.1 Rosmarinic Acid C4H medium pass
GtomA01G0023370.1 Rosmarinic Acid C4H medium pass
GtomA01G0024490.1 Rosmarinic Acid C4H low borderline
GtomA02G0000530.1 Rosmarinic Acid C4H medium pass
GtomA02G0002500.1 Rosmarinic Acid C4H low borderline
GtomA02G0002780.1 Rosmarinic Acid C4H low borderline
GtomA02G0002790.1 Rosmarinic Acid C4H low borderline
GtomA02G0002800.1 Rosmarinic Acid C4H low borderline
GtomA02G0002810.1 Rosmarinic Acid C4H low borderline
GtomA02G0002830.1 Rosmarinic Acid C4H low borderline
GtomA02G0002830.2 Rosmarinic Acid C4H low borderline
GtomA02G0002830.3 Rosmarinic Acid C4H low borderline
GtomA02G0002840.1 Rosmarinic Acid C4H low borderline
GtomA02G0002870.1 Rosmarinic Acid C4H low borderline
GtomA02G0002890.1 Rosmarinic Acid C4H low borderline
GtomA02G0002900.1 Rosmarinic Acid C4H low borderline
GtomA02G0002910.1 Rosmarinic Acid C4H low borderline
GtomA02G0002920.1 Rosmarinic Acid C4H low borderline
GtomA02G0002930.1 Rosmarinic Acid C4H low borderline
GtomA02G0002940.1 Rosmarinic Acid C4H low borderline
GtomA02G0002950.1 Rosmarinic Acid C4H low borderline
GtomA02G0002960.1 Rosmarinic Acid C4H low borderline
GtomA02G0002980.1 Rosmarinic Acid C4H low borderline