Oryza longistaminata (oryza_longistaminata)
Imported from atlas release summary for Oryza longistaminata.
2086
Candidate Protein Records
1740
Pathway-Level Records
4443
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4443
Family-Level Calls
C4H
6.91%
C3'H/CYP98A
6.62%
BAHD
4.73%
POD
4.41%
T3O
4.14%
UGT
3.89%
IFS
3.56%
CYP76
3.53%
Other Families
62.21%
More Families (97)
7DLGT
143
3.22%
4CL
126
2.84%
UFGT
124
2.79%
BR6OX2/CYP85A2
113
2.54%
F3'H/CYP75B
110
2.48%
DWF4/CYP90B1
108
2.43%
CYP71
93
2.09%
F3H
80
1.8%
NMT
77
1.73%
STR
70
1.58%
CAD
69
1.55%
TPS
68
1.53%
SMT1/SMT2/SMT3
63
1.42%
CAS
57
1.28%
PYKS
56
1.26%
GES
54
1.22%
LAC
45
1.01%
CSE
44
0.99%
H6H
43
0.97%
SGD
43
0.97%
TRI/TRII
41
0.92%
T16H
41
0.92%
CCR
41
0.92%
CODM/T6ODM
40
0.9%
FNS
40
0.9%
F3'5'H/CYP75A
39
0.88%
CYP51G1
37
0.83%
CHS
36
0.81%
G8O/G8H
35
0.79%
IFR
35
0.79%
COMT
34
0.77%
NCS
33
0.74%
PAL
33
0.74%
BR6OX1/CYP85A1
33
0.74%
SLS
32
0.72%
ANR
32
0.72%
GS
31
0.7%
DFR
31
0.7%
HCT
31
0.7%
IO
30
0.68%
CYP90D1
29
0.65%
PMT
28
0.63%
16OMT
28
0.63%
F5H/CYP84A
28
0.63%
RAS
26
0.59%
LAMT
24
0.54%
7DLH
22
0.5%
BBE
19
0.43%
COR
18
0.41%
8HGO
16
0.36%
CPD/CYP90A1
15
0.34%
FPPS
12
0.27%
ANS/LDOX
11
0.25%
CPR
11
0.25%
ROT3/CYP90C1
11
0.25%
CYP80B1
10
0.23%
MPO
9
0.2%
CNMT
9
0.2%
TAT
9
0.2%
SQS/FDFT1
9
0.2%
TYDC_DDC
8
0.18%
CCoAOMT
7
0.16%
MVD
7
0.16%
AACT
7
0.16%
CYP80F1
6
0.14%
CYP719
6
0.14%
CHI
6
0.14%
SMO1/SMO2
6
0.14%
HPPR
5
0.11%
DXS
5
0.11%
MVK
5
0.11%
GGPPS
5
0.11%
XMT_MXMT_DXMT
4
0.09%
TDC
4
0.09%
MDS/IspF
4
0.09%
HMGS
4
0.09%
ISY
3
0.07%
DWF1
3
0.07%
FK
3
0.07%
MCT/IspD
3
0.07%
HMGR
3
0.07%
HDR/IspH
3
0.07%
ODC
2
0.05%
ADC
2
0.05%
6OMT_4OMT_SOMT
2
0.05%
DET2
2
0.05%
SQE
2
0.05%
HDS/IspG
2
0.05%
IDI
2
0.05%
FLS
1
0.02%
DWF7
1
0.02%
CPI1
1
0.02%
DWF5
1
0.02%
HYD1
1
0.02%
DXR
1
0.02%
PMK
1
0.02%
CMK/IspE
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 461 | 19 | BAHD (151) | View species results |
| Alkaloid pathway | 386 | 24 | 7DLGT (74) | View species results |
| Phenylpropanoid pathway | 383 | 13 | POD (164) | View species results |
| Flavonoid pathway | 221 | 13 | UFGT (108) | View species results |
| Rosmarinic acid pathway | 180 | 7 | C4H (110) | View species results |
| Steroid pathway | 109 | 14 | SMT1/SMT2/SMT3 (45) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1898 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 267 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| KN539709.1_FGP004 | Alkaloid | TRI/TRII | medium | pass |
| KN539735.1_FGP002 | Alkaloid | TRI/TRII | medium | pass |
| KN540265.1_FGP002 | Alkaloid | TRI/TRII | medium | pass |
| KN540271.1_FGP005 | Alkaloid | TRI/TRII | medium | pass |
| KN540376.1_FGP004 | Alkaloid | TRI/TRII | medium | pass |
| KN541031.1_FGP002 | Alkaloid | TRI/TRII | medium | pass |
| KN541031.1_FGP003 | Alkaloid | TRI/TRII | low | borderline |
| KN541495.1_FGP002 | Alkaloid | TRI/TRII | low | borderline |
| KN542820.1_FGP002 | Alkaloid | TRI/TRII | medium | pass |
| KN543774.1_FGP001 | Alkaloid | TRI/TRII | medium | pass |
| KN544099.1_FGP001 | Alkaloid | TRI/TRII | medium | pass |
| AMDW01035220.1_FGP001 | Alkaloid | TYDC_DDC | medium | borderline |
| KN538682.1_FGP003 | Alkaloid | TYDC_DDC | medium | borderline |
| KN538682.1_FGP027 | Alkaloid | TYDC_DDC | medium | borderline |
| KN538682.1_FGP132 | Alkaloid | TYDC_DDC | medium | borderline |
| KN539204.1_FGP006 | Alkaloid | TYDC_DDC | medium | borderline |
| KN540080.1_FGP004 | Alkaloid | TYDC_DDC | low | borderline |
| KN541235.1_FGP001 | Alkaloid | TYDC_DDC | medium | borderline |
| KN543523.1_FGP001 | Alkaloid | TYDC_DDC | medium | borderline |
| AMDW01031562.1_FGP001 | Alkaloid | XMT_MXMT_DXMT | medium | borderline |
| KN539647.1_FGP004 | Alkaloid | XMT_MXMT_DXMT | medium | borderline |
| KN540578.1_FGP002 | Alkaloid | XMT_MXMT_DXMT | medium | borderline |
| KN542064.1_FGP001 | Alkaloid | XMT_MXMT_DXMT | medium | borderline |
| AMDW01039553.1_FGP001 | Flavonoid | 4CL | medium | pass |
| KN538681.1_FGP060 | Flavonoid | 4CL | medium | pass |
| KN538682.1_FGP139 | Flavonoid | 4CL | medium | pass |
| KN538684.1_FGP016 | Flavonoid | 4CL | medium | pass |
| KN538699.1_FGP004 | Flavonoid | 4CL | low | borderline |
| KN538705.1_FGP009 | Flavonoid | 4CL | medium | pass |
| KN538712.1_FGP061 | Flavonoid | 4CL | low | borderline |
| KN538713.1_FGP089 | Flavonoid | 4CL | low | borderline |
| KN538715.1_FGP056 | Flavonoid | 4CL | low | borderline |
| KN538717.1_FGP019 | Flavonoid | 4CL | medium | pass |
| KN538737.1_FGP049 | Flavonoid | 4CL | medium | pass |
| KN538743.1_FGP010 | Flavonoid | 4CL | medium | pass |
| KN538743.1_FGP016 | Flavonoid | 4CL | medium | pass |
| KN538767.1_FGP032 | Flavonoid | 4CL | medium | pass |
| KN538795.1_FGP012 | Flavonoid | 4CL | medium | pass |
| KN538807.1_FGP055 | Flavonoid | 4CL | medium | pass |
| KN538819.1_FGP011 | Flavonoid | 4CL | low | borderline |
| KN538839.1_FGP002 | Flavonoid | 4CL | medium | pass |
| KN538902.1_FGP002 | Flavonoid | 4CL | medium | pass |
| KN538902.1_FGP007 | Flavonoid | 4CL | medium | pass |
| KN538950.1_FGP010 | Flavonoid | 4CL | medium | pass |
| KN538983.1_FGP020 | Flavonoid | 4CL | medium | pass |
| KN538997.1_FGP012 | Flavonoid | 4CL | low | borderline |
| KN539018.1_FGP008 | Flavonoid | 4CL | low | borderline |
| KN539205.1_FGP019 | Flavonoid | 4CL | medium | pass |
| KN539217.1_FGP003 | Flavonoid | 4CL | low | borderline |
| KN539413.1_FGP009 | Flavonoid | 4CL | medium | pass |