Oryza longistaminata (oryza_longistaminata)
Imported from atlas release summary for Oryza longistaminata.
1740
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1740
Candidate Genes
C4H
6.91%
C3'H/CYP98A
6.62%
BAHD
4.73%
POD
4.41%
T3O
4.14%
UGT
3.89%
IFS
3.56%
CYP76
3.53%
Other Families
62.21%
More Families (97)
7DLGT
143
3.22%
4CL
126
2.84%
UFGT
124
2.79%
BR6OX2/CYP85A2
113
2.54%
F3'H/CYP75B
110
2.48%
DWF4/CYP90B1
108
2.43%
CYP71
93
2.09%
F3H
80
1.8%
NMT
77
1.73%
STR
70
1.58%
CAD
69
1.55%
TPS
68
1.53%
SMT1/SMT2/SMT3
63
1.42%
CAS
57
1.28%
PYKS
56
1.26%
GES
54
1.22%
LAC
45
1.01%
CSE
44
0.99%
H6H
43
0.97%
SGD
43
0.97%
TRI/TRII
41
0.92%
T16H
41
0.92%
CCR
41
0.92%
CODM/T6ODM
40
0.9%
FNS
40
0.9%
F3'5'H/CYP75A
39
0.88%
CYP51G1
37
0.83%
CHS
36
0.81%
G8O/G8H
35
0.79%
IFR
35
0.79%
COMT
34
0.77%
NCS
33
0.74%
PAL
33
0.74%
BR6OX1/CYP85A1
33
0.74%
SLS
32
0.72%
ANR
32
0.72%
GS
31
0.7%
DFR
31
0.7%
HCT
31
0.7%
IO
30
0.68%
CYP90D1
29
0.65%
PMT
28
0.63%
16OMT
28
0.63%
F5H/CYP84A
28
0.63%
RAS
26
0.59%
LAMT
24
0.54%
7DLH
22
0.5%
BBE
19
0.43%
COR
18
0.41%
8HGO
16
0.36%
CPD/CYP90A1
15
0.34%
FPPS
12
0.27%
ANS/LDOX
11
0.25%
CPR
11
0.25%
ROT3/CYP90C1
11
0.25%
CYP80B1
10
0.23%
MPO
9
0.2%
CNMT
9
0.2%
TAT
9
0.2%
SQS/FDFT1
9
0.2%
TYDC_DDC
8
0.18%
CCoAOMT
7
0.16%
MVD
7
0.16%
AACT
7
0.16%
CYP80F1
6
0.14%
CYP719
6
0.14%
CHI
6
0.14%
SMO1/SMO2
6
0.14%
HPPR
5
0.11%
DXS
5
0.11%
MVK
5
0.11%
GGPPS
5
0.11%
XMT_MXMT_DXMT
4
0.09%
TDC
4
0.09%
MDS/IspF
4
0.09%
HMGS
4
0.09%
ISY
3
0.07%
DWF1
3
0.07%
FK
3
0.07%
MCT/IspD
3
0.07%
HMGR
3
0.07%
HDR/IspH
3
0.07%
ODC
2
0.05%
ADC
2
0.05%
6OMT_4OMT_SOMT
2
0.05%
DET2
2
0.05%
SQE
2
0.05%
HDS/IspG
2
0.05%
IDI
2
0.05%
FLS
1
0.02%
DWF7
1
0.02%
CPI1
1
0.02%
DWF5
1
0.02%
HYD1
1
0.02%
DXR
1
0.02%
PMK
1
0.02%
CMK/IspE
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 461 | 19 | BAHD (151) | View species results |
| Alkaloid pathway | 386 | 24 | 7DLGT (74) | View species results |
| Phenylpropanoid pathway | 383 | 13 | POD (164) | View species results |
| Flavonoid pathway | 221 | 13 | UFGT (108) | View species results |
| Rosmarinic acid pathway | 180 | 7 | C4H (110) | View species results |
| Steroid pathway | 109 | 14 | SMT1/SMT2/SMT3 (45) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1898 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 267 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| AMDW01008971.1_FGP001 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| AMDW01015013.1_FGP001 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| AMDW01021447.1_FGP001 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| AMDW01023878.1_FGP001 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| AMDW01037241.1_FGP001 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| AMDW01040908.1_FGP001 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN538684.1_FGP011 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| KN538688.1_FGP181 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| KN538701.1_FGP050 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| KN538705.1_FGP053 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| KN538761.1_FGP043 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN538768.1_FGP006 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| KN538785.1_FGP019 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN538876.1_FGP008 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN538876.1_FGP012 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN538911.1_FGP003 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN538911.1_FGP005 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN538911.1_FGP010 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN538911.1_FGP016 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN538981.1_FGP004 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN539022.1_FGP016 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN539028.1_FGP009 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| KN539028.1_FGP015 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| KN539140.1_FGP013 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN539238.1_FGP010 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN539270.1_FGP004 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN539277.1_FGP006 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN539287.1_FGP011 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN539297.1_FGP006 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN539300.1_FGP006 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN539307.1_FGP008 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN539328.1_FGP001 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| KN539328.1_FGP002 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| KN539328.1_FGP008 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| KN539427.1_FGP011 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN539465.1_FGP001 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN539466.1_FGP007 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN539484.1_FGP008 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN539516.1_FGP001 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN539695.1_FGP003 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN539756.1_FGP002 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN539796.1_FGP005 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN539906.1_FGP006 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN539928.1_FGP003 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN539928.1_FGP010 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN539992.1_FGP002 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN540084.1_FGP001 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN540121.1_FGP003 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| KN540146.1_FGP001 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| KN540146.1_FGP007 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |